| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1271 |
|---|
| Symbol | |
|---|
| ID | 5661670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1547568 |
|---|
| End bp | 1551101 |
|---|
| Gene Length | 3534 bp |
|---|
| Protein Length | 1177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641235833 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_001501133 |
|---|
| Protein GI | 157961099 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACATCGC ACATAATTAT TACAACAGGA ACATTACTTC GTGAACTCTC TCGCTTCCGA
CTAGCAGAGA TAGCGCGTAT GTACGGTATC GCTCTGCCTG ATAAGGCTCG TGAGGAACAA
GTCGAGCATT TACTTGCAAC TATTGAAATT AACTTCAGTG ATCTACTTGG ACATTTGACG
CGTGAAGAAC TCAGGCGAGC ATGTCGAACT CATAGTTTAG ATGATACTGG TCGTTCCCGA
GCGAAACTAG CTGAGACATT ACTCGCAGTT TTTGACGGTG ATAGTAAAGC ATACGACGTG
TCAGGCCTTT TTGCGTCTAG CCGGATTGAT AGAGAGGCTC CTATTTCTGG TGACGTTATT
CGACTACGGC ATCGTCAGTG GCTGGTTGAA GATGTAATCC CACCACCGGA GCAGAATCAA
CTAACCTTGA TAAAGGCTGT TTGTTTAGAT GACGATAATC AGGGCGAAAC CATCGACGTT
CTCTGGGAGA TGGAGCTCGG TGCGAACGTT GTTCAACAAA AAATGGGAGG GCTTGGCGCA
AATATAGACG AGCCTCGTCA TTTCGCTGCG TACCTTCACG CTCTTAAATG GAACTCGGTA
ACTGCAACAG ATCGTAATTT ATTCCAAGCT CCTTTTCGAG CGGGGATCAT GTTACAGGCG
CATCAACTTG AGCCTCTTCG CCGAGCACTT TCCTTGCCGC GTGCAAATCT GTTTATTGCT
GATGATGTAG GTCTTGGTAA GACTATTGAA GCGGGATTGG TACTGCAAGA GCTATTACTT
CGTCAGCGAG TGGAGTTCAT TCTAATTTCT TGCCCCGCAT CAGTCTGTCT CCAATGGCGC
GATGAGATGT TTAAGCGCTT TGGTTTGCAG TTTGAGGTGA TGAATCGCGC ATTAGTGGAG
CGTCGCCGAC GTGAACGTGG CTTCGGTGTA AATCCTTGGA GTACACACAA TCGGTTTATC
ATCTCACACG ATTTGTTGCG ACGACCTGAA TATCGTGAAC CTCTTTTAAA CACTTTAGGT
GATAAAGCAA AGCGAAGTCT ACTCGTCTTG GATGAGGCTC ATGTTGCTGC ACCATCCTCA
GCAAGTAACT ACGCAACGGA TTCAAATATT ACCAAGGTTA TTCGTGATGT AGCACCTCGT
TTCGAGAACA GGCTGTTTCT TAGTGCGACT CCCCACAACG GTCATTCTAA TAGTTTTGCC
TCTTTACTAG AGTTGCTAGA TCCTCAGCGT TTTACTCGTG GTGTTCCGGT CACAGATTCT
AAACAGCGCG ATGCAGTCAT GGTAAGAAGA CTTAAGGAAG ACCTTAGAGT TCTAAACCGA
GGCTCATATC CATTGCGTAA ATTAGTGCGA CACAGCCTCA AGCATGACGG TGAAAGGTGG
ATGGTAGAGG CCGCTGATTG TGATTCCTTA TACTCTGCAC AATGCATAGG AGCCTCATTT
CCCTTCGAAC TACAGCTCGT GACGATGCTA AACCAATACT CTGCTCTACG AACAGAAATA
GGTAAAGGTG GTAGGCTCGC ATTAATAAAT CTTCAAAAAC GGCTGTTAAG CAGTGTAGCA
GCGTTTAGTA AGACATTAAA AAAGCACGCT GAGGGCAAGA GTGGTGTCAA TGTTTTAAAT
GATAGTGAAT CATTGAACAA AGTTGAAATC GAACGGGATG ATCTCTATGG GGATGAAATC
GAAGATGAGA CTAAAGAGCT TGAAGCTATA GTCGCAGCGA CTGCTAACCT GTCGCCTCCA
AATGAGCAAG CGCTTAAGCT TCTCAAGGAA ATGAGCAAAT TAGCCCAACG ACATCAGGAT
GATCCAGATG CTAAAATTCT CGGCTTTCTT TCTTGGGTGC GACAAAATCA GTGTCCAACA
GCGGGATTTG AAATAGATAG CTCAATAAGT AAAGCCTGGA GTGATAGGCG AGTTATCATC
TTCACAGAGT CGATGGATAC TAAAACTTAT ATTGAGCGTC AACTTCAGCG CTCATTAGCG
CATACCGAAG ATGGTCATCG GCGAGTTATG ACATTCCATG GTGGCCTCGG TGATGACAAG
CGTGCGGAAA TTCAACAAGC CTTCAATAGT CCTCCTAACG AGCATCCTGT GCGTATTTTA
ATCGCAACTG ATGCCGCTCG AGAAGGTGTG AACTTACAAG GACATTGTGC AGATCTATTC
CATTATGATA TCCCTTGGAA CCCTGCTCGA ATGGAACAGC GTAATGGCCG AATAGATCGA
ACACTGCAGA GTGAGACTGA AGTACGTTGT CATTACTTCG TTTACGCAGA TAGAGATGAA
GATATAGTTC TCGATAAGCT CGTACAAAAG GTTAATACCA TTCAGCGCGA ACTCGGCTCT
CTAAGTGCGG TGATTATGGG GCGGATTGAG TCTCAGCTTC AGAAAGAGGG GATTAGTGCG
ACTACAGCTT CTCTGCTTAA TGAAAATGAG CGAGAAAAAC GGCAGGTGGC TGTGGCCAAG
AAAGAGCTAG AGCAAACACG TGTAACTCAG AAGGAGTTGG CTCATGAATT GGAAAAGTTA
GACGAAATTT TAGCTCGCTC CGAGAAAGTA ACCTCATTCG AACCAAAGCT GTTGCGCGAC
GCGATTAATG CAGGGCTTGA ACTTAGTGGA GCTGCACCTC TTCAGTTAGC ACCCGGCGCA
GTTCCTGGCG CTGAAGCCTT TACGCTTCCT GAACTACCAG AGTCTTGGGC CGGAACCATC
GATAGTCTAC GCCTTCCTCG TGGACGTGAT GAATATTTCA GTGATTGGCG AGCAAAGCCA
CCACTGCCAG TATTGTTTGA GCCCCCACCA AAGATGAACA GTGCTGCTGC ACAGCTCCAT
CTTTCGCATC CCTTTGTAAA GCGGATATTT AGTCGATTCC TTTCCCAAGG TTACTCTGCA
CATGATCTTA ATAGGGTCAC AATTGTTCGA AGTAACGATA GTTTTATTCG AGTGATAGCA
TTTGGTCGCT TATCACTTTT TGGTAAAGGA GCTGCTCGTT TACATGACCA ACTAGTGAGT
GTTGCCGCTC GTTGGGTGGA GACTAGCAGT GAGCCTTTAA AACCTTTTAC TGAAGCCGCC
GATAGAAAAG CACTTGAGTC ATTAGAGCAA ATATTGGTGG AGTCACCAAC ACTTGAAGGG
ATTTCAGATA GCGTCAAGAA AAAAGTAATA GAAGCTGCAC CAACACTCTT TAGTCAACTG
TGGAAGCATG TTGAGACAGA AGCTGATGCA CGTGCTAAAG AAGCTTTACT AGAGCTTGAA
CGAAGAGGTC ACGAAGAAGC TGACCAATTA AAAGAGATAC TCGAACGACA GCGGGATGCG
ATTGAAAGTC AGTTACAGTT AAAGACTCCG CAGTTTGAGT TTAATTTTGA ACCCCTTACT
CGGGGTGAGC AAAAACAAGT CGAAGCTGAA AAAAGGCATA TGGAGCACCG TTTACTGATG
ATTGACCGTG AGATACGAGA GGATCCGGCA GATCTTAAGT CGCTTTATAA CGTGAGCCTA
AACCGATTAC AGCCTGTGGG TCTTGTAGTT CTTTGGCCGA AGACGAGAGG TTGA
|
|---|
| Protein sequence | MTSHIIITTG TLLRELSRFR LAEIARMYGI ALPDKAREEQ VEHLLATIEI NFSDLLGHLT
REELRRACRT HSLDDTGRSR AKLAETLLAV FDGDSKAYDV SGLFASSRID REAPISGDVI
RLRHRQWLVE DVIPPPEQNQ LTLIKAVCLD DDNQGETIDV LWEMELGANV VQQKMGGLGA
NIDEPRHFAA YLHALKWNSV TATDRNLFQA PFRAGIMLQA HQLEPLRRAL SLPRANLFIA
DDVGLGKTIE AGLVLQELLL RQRVEFILIS CPASVCLQWR DEMFKRFGLQ FEVMNRALVE
RRRRERGFGV NPWSTHNRFI ISHDLLRRPE YREPLLNTLG DKAKRSLLVL DEAHVAAPSS
ASNYATDSNI TKVIRDVAPR FENRLFLSAT PHNGHSNSFA SLLELLDPQR FTRGVPVTDS
KQRDAVMVRR LKEDLRVLNR GSYPLRKLVR HSLKHDGERW MVEAADCDSL YSAQCIGASF
PFELQLVTML NQYSALRTEI GKGGRLALIN LQKRLLSSVA AFSKTLKKHA EGKSGVNVLN
DSESLNKVEI ERDDLYGDEI EDETKELEAI VAATANLSPP NEQALKLLKE MSKLAQRHQD
DPDAKILGFL SWVRQNQCPT AGFEIDSSIS KAWSDRRVII FTESMDTKTY IERQLQRSLA
HTEDGHRRVM TFHGGLGDDK RAEIQQAFNS PPNEHPVRIL IATDAAREGV NLQGHCADLF
HYDIPWNPAR MEQRNGRIDR TLQSETEVRC HYFVYADRDE DIVLDKLVQK VNTIQRELGS
LSAVIMGRIE SQLQKEGISA TTASLLNENE REKRQVAVAK KELEQTRVTQ KELAHELEKL
DEILARSEKV TSFEPKLLRD AINAGLELSG AAPLQLAPGA VPGAEAFTLP ELPESWAGTI
DSLRLPRGRD EYFSDWRAKP PLPVLFEPPP KMNSAAAQLH LSHPFVKRIF SRFLSQGYSA
HDLNRVTIVR SNDSFIRVIA FGRLSLFGKG AARLHDQLVS VAARWVETSS EPLKPFTEAA
DRKALESLEQ ILVESPTLEG ISDSVKKKVI EAAPTLFSQL WKHVETEADA RAKEALLELE
RRGHEEADQL KEILERQRDA IESQLQLKTP QFEFNFEPLT RGEQKQVEAE KRHMEHRLLM
IDREIREDPA DLKSLYNVSL NRLQPVGLVV LWPKTRG
|
|---|
| |