| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1216 |
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| Symbol | |
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| ID | 5661615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1481454 |
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| End bp | 1482605 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641235778 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001501078 |
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| Protein GI | 157961044 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0651482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATGA CTGAAGAAAA GGGTGTGACT GCGGACGAGG ACGTTACAAA AGGTGAGCAG
AGTAACGAGC CCGAAAAAGC CGAGAACAAC AAGAATACTA AAATTCGCAA AGCCACTAAT
ATCATCTTAA TCGTCGTCAG TTTCCTCTTC GTTTTTCATC TTATCGCCGA CCGATTTATC
CCCTCAACCG ATCTCGGTCG CATACGTGGC TATGTGGTTC CTATTGCCCC TCAGGTCTCT
GGCGAGATTG TTGATATCTT AGTTGAGCCT AACACCTTAA TAAAACAAGG TGATGTACTC
GCCAAGATTA ATCCACAAGA TTATGAAATT GCGCTGCAAC AAGCGGAGCA ATCACTCAAA
AAGGCCGGAC AAAATGTCGG TGCTCAAACG GCTAATGTTG CCGCCGCTCA AGCTAAGGTC
ACCAATGCTC AGGCTAATCT AACCAATGCC CAAGTTCAGT CTAAGCGTAT TTTTGCCATG
GTTGATAAAG CGGTTATGTC ACAAGCTGAT GCCGATAATG CCCGCGCCGA GCTGACAAAA
GCAGAAGCTG GCGTTGCTAG TGCTAAGGCC GATCTAGCCA AAGCCAAGGA ACGTTTAGGC
GCCGAAGGCG AGAATAATAC TAATGTAAAA TCGGCCCTAT TGAGTCTAGA AAAAGCCCAG
CTGGATCTAA CCCGAACTTC TATTACGGCA CCGACCAATG GCGTAGCCTC AAACTTTCGA
TTAAAAGAGG GGATTTACGC CAGTGCAGGC CAGCCAGTCA TGACTTTTAT CTCGTCGGAA
GATGTGTGGA TTGAGGCTTA CTTTAGAGAA AACAGCTTAG GCAATATGCA GCCAGGTGAC
AAAGTTGAGT TTGCCCTCGA TTATGCCCCA GGAAAGGTCT TTCAAGCGAC AGTTGGCAGC
ATAGATTACG GTATCGACTG GGGACAGAGT GAGCAGACGG GCAAGTTGGC ACAAGTGTCA
GGCCAAACAG GCTGGTTGCG TCAGGCCCAG CGCTTTCCTG TCACGATCGT ATTACCTGCA
AAAGAAGCTA TGGGCTTAAG GCGCGTGGGT GGGCAGGTTG ATGTAATTGT CTACACCAGT
GACAGCAGTA TCATTAATCT ATTTGGTAAA TTCTGGATCC GCCTCGTGAG CTGGTTCTCT
TATGTCAGAT AG
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| Protein sequence | MSMTEEKGVT ADEDVTKGEQ SNEPEKAENN KNTKIRKATN IILIVVSFLF VFHLIADRFI
PSTDLGRIRG YVVPIAPQVS GEIVDILVEP NTLIKQGDVL AKINPQDYEI ALQQAEQSLK
KAGQNVGAQT ANVAAAQAKV TNAQANLTNA QVQSKRIFAM VDKAVMSQAD ADNARAELTK
AEAGVASAKA DLAKAKERLG AEGENNTNVK SALLSLEKAQ LDLTRTSITA PTNGVASNFR
LKEGIYASAG QPVMTFISSE DVWIEAYFRE NSLGNMQPGD KVEFALDYAP GKVFQATVGS
IDYGIDWGQS EQTGKLAQVS GQTGWLRQAQ RFPVTIVLPA KEAMGLRRVG GQVDVIVYTS
DSSIINLFGK FWIRLVSWFS YVR
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