| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1212 |
|---|
| Symbol | |
|---|
| ID | 5661611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1475962 |
|---|
| End bp | 1476579 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641235774 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001501074 |
|---|
| Protein GI | 157961040 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.110837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGCAAC CCTTGCCCTC AGATGATAAA TCTAGTGAGG TCGATTCTGA TCAAGCCTTG
ATGTTGCAAT ACGCCGCAGG CAGCACTCGA GCTTTTGAGC TACTTTACAA TAAGCACAAA
GGTTCGCTAT ATCGCTATTT CGTTCGGCAA ATTTATGATC AACAGTTAGC AGAAGACCTC
TATCAGGAAA CTTGGAGTCG AGTGATAAAG GCGGCCAGCA GTTATGAAAC CAGCGCGAAA
TTTACCACTT GGCTATATCG TATCGCTCAT AACCTCATTA TTGACCATGT TAGGGCACTT
AAGCCGGTGA ATAACTTCAG TGAAGTATTC GAGGCAGAGC AAGACGTTGA GACACAGCTA
AGTAACGATG ATTTTAACCC TGAAGGGCAA ATGTTAGACA ATCAAAAAGC AATCTTGCTT
AAAGGCTGTG TTGCTAACTT ACCTCAAGTG CAGAAAGAGG CGTTTGTGCT AAACGTCGAG
ATGGGTTTTA CCGCTGCGAT TATTGCCGAT ATTGCTGGAG CGACATTAGA AGCAACAAAG
AGCCGTATTC GTTATGCCTA TAAGGGGCTT AAAGATTGCG TAGACTTAAA ATGGCAAGGA
GCTGAGCATG ACAGATAA
|
|---|
| Protein sequence | MEQPLPSDDK SSEVDSDQAL MLQYAAGSTR AFELLYNKHK GSLYRYFVRQ IYDQQLAEDL
YQETWSRVIK AASSYETSAK FTTWLYRIAH NLIIDHVRAL KPVNNFSEVF EAEQDVETQL
SNDDFNPEGQ MLDNQKAILL KGCVANLPQV QKEAFVLNVE MGFTAAIIAD IAGATLEATK
SRIRYAYKGL KDCVDLKWQG AEHDR
|
|---|
| |