| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1193 |
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| Symbol | |
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| ID | 5661592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1447036 |
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| End bp | 1448004 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641235745 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001501055 |
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| Protein GI | 157961021 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGCAGAT TAAATAGTGC CGTTGTTGCA GAGCAGCCAA AAAATGACTC TGTAAAAGAT
TCATCGAATA CTCTTACTAA ACAGGATGTG AAAGAAGCTG AATTAGAGCA GCAAGTGCAA
GATGATTTAC AAAAAAACTT AGATGCCACA CAGCTGTATC TAGGTGAGAT TGGATTTTCC
CCTCTCCTCA GTGCCGAGGA AGAAGTGTAT TTTTCACGTA AGTCCCTTAA AGGGTGTGAA
AAATCTCGTA ACCGTATGAT TGAAAGTAAC CTCAGATTAG TCGTAAAAAT TGCACGTCGA
TATAATAATC GTGGCTTAGC GTTACTCGAT CTTATCGAAG AGGGCAATTT AGGCCTTATC
CGTGCAGTAG AGAAGTTCGA TCCTGAGCGT GGCTTTAGAT TTTCAACCTA TGCAACATGG
TGGATTAGAC AGACGATTGA GCGAGCAATT ATGAATCAGA CTCGTACCAT TCGTTTACCC
ATCCATGTGG TAAAAGAGCT GAATGTTTAT CTGCGTACCG CAAGAGAGCT AGCGCATAAA
TTAGATCACG AGCCTACGGC AGAAGAGATT GCAGATAAGC TAGATTTACC TAGTGCGGAT
GTAAGCCGTA TGCTAAAGCT TAATGAAAGA ATCACCTCTG TTGACACCCC CTTAGGTGGC
GAAAGTGATA AAGCATTACT AGATGTGCTT GCCGATGATG ATAACGTAGG GCCTGACTAT
AAGGTGCAGG ACGAAGACAT GTCCAAGTCT GTAGTCAAAT GGTTAGATGA GCTTAATACC
AAGCAAAGAG AAGTGTTAGC GCGCCGATTT GGTTTATTGG GCTACGAGCC ATCTACGCTT
GAAAACGTAG GTAAAGAAAT TGGCTTAACC CGTGAAAGAG TTCGTCAAAT TCAAGTCGAG
GCTCTCAAGC GTCTGAAAGA TTTACTGGGG GCACAAGGCC TTTCTGTTGA AGCCATTTTT
AAAGCATAA
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| Protein sequence | MGRLNSAVVA EQPKNDSVKD SSNTLTKQDV KEAELEQQVQ DDLQKNLDAT QLYLGEIGFS
PLLSAEEEVY FSRKSLKGCE KSRNRMIESN LRLVVKIARR YNNRGLALLD LIEEGNLGLI
RAVEKFDPER GFRFSTYATW WIRQTIERAI MNQTRTIRLP IHVVKELNVY LRTARELAHK
LDHEPTAEEI ADKLDLPSAD VSRMLKLNER ITSVDTPLGG ESDKALLDVL ADDDNVGPDY
KVQDEDMSKS VVKWLDELNT KQREVLARRF GLLGYEPSTL ENVGKEIGLT RERVRQIQVE
ALKRLKDLLG AQGLSVEAIF KA
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