Gene Spea_1181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1181 
SymbolrumA 
ID5661580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1433451 
End bp1434788 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content47% 
IMG OID641235733 
Product23S rRNA 5-methyluridine methyltransferase 
Protein accessionYP_001501043 
Protein GI157961009 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0405802 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACAAT TTTTTAAAGC AAAACCAAAT AGATCTAAGC AATTATCGTC GAAGTTATCG 
TTAAAGGTAA CGCAGCTGGA TCACCTCGGG GCTGGCATTG CTCATCACGA CGGTAAGATT
GTTTTCATCA ATGGCGCCTT GCCAGATGAG ACGGTATCGG TGCAGTTAAC TGAGCAGAAG
AAGAAATTTT CTCGAGGCAA GTTACTCAAA ATAGAGAAGC GCTCTACCGA GCGTGTCACT
CCGCCGTGTC CACACTTTGA TAAATGTGGT GGTTGCGACC TGCAGCACCT CGACATTGAG
GCTCAGCGCA AACATAAGGC TAATACGCTC GTCGACTTAG TGAATAAATT TGCTCAAACC
CAGGCCAGTG AAGTCTGCGC TCCACTCAGC GGTGACGCTT GGCATTACCG CCGCCGTGCG
CGCCTAGCGA CCTGGTTCGA TAAGAATACT AAGCACATTA GTTTGGGCTT TAGGGCGAGT
AGCAGCAGCG ATGTGGTGGA GATCCAGTCT TGTGCGGTAT TAGCTGAGCC CTTATCGGCC
TTAATTCCAG ACTTGGCTTT TATGCTTAAT CAGTTAAGCG GTAAAAAAGC CTTAGGCCAC
GTTGAGCTGA CTCAAGCCGA TAACGGCAAT TTTGTTGTGC TACGTGTGAC TAAGGTTCTG
TCAGATAAAG ATAAGGCTCG ATTAGTTGAA TTTGCGAATA AGCATGAGGT TATTGTGCTG
CTGCAAGATG ATGATGCTCA GTGCGAACAC CTAAATGGCG CGGGTGAGCA ACCATTTTAT
GCCTTATCGG GCAGTGACAT TAAGCTTAAC TTCTCCCCGG GTAACTTTAT TCAAGTAAAT
GGTCCGGTAA ACCAAGCTAT GGTGAGCCAG GCTGTTGAAT GGTTGTCGCC AAAAGCGGGT
GAGCGAGTGC TAGATCTTTT CTGTGGTATT GGTAACTTCA GTTTGCCACT TGCCAAAGAT
GGCGCCGAAG TGATTGGTGT CGAAGGGGTT GTGGCTATGG TCGAGCAGGC AAGAGTTAAT
GCCAAGCAGA GCGGTTTAGA TAAAGTTGCT TTCTATCATG CCGACTTGAG TGCCGATCTG
TCAAAAGAGC CATGGCTAGG CAAGGTCGAT AAGATGTTAA TCGATCCCGC TCGTGCGGGG
GCTTATGAGA GCATGCAATC ACTGAAAAAG CTAAAACCTA AAGCCTTAGT CTATGTTTCT
TGTAATCCTG CGAGTCTTGC CCGCGACAGT GAAGTGATAT TAAAGCAAGG TTACCAGCTT
AAAAAAATTG GTTTAATCGA TATGTTCCCA CAGACACATC ACTTAGAGTC GATGGCGTTG
TTTGAGTTAG GAAATTAA
 
Protein sequence
MAQFFKAKPN RSKQLSSKLS LKVTQLDHLG AGIAHHDGKI VFINGALPDE TVSVQLTEQK 
KKFSRGKLLK IEKRSTERVT PPCPHFDKCG GCDLQHLDIE AQRKHKANTL VDLVNKFAQT
QASEVCAPLS GDAWHYRRRA RLATWFDKNT KHISLGFRAS SSSDVVEIQS CAVLAEPLSA
LIPDLAFMLN QLSGKKALGH VELTQADNGN FVVLRVTKVL SDKDKARLVE FANKHEVIVL
LQDDDAQCEH LNGAGEQPFY ALSGSDIKLN FSPGNFIQVN GPVNQAMVSQ AVEWLSPKAG
ERVLDLFCGI GNFSLPLAKD GAEVIGVEGV VAMVEQARVN AKQSGLDKVA FYHADLSADL
SKEPWLGKVD KMLIDPARAG AYESMQSLKK LKPKALVYVS CNPASLARDS EVILKQGYQL
KKIGLIDMFP QTHHLESMAL FELGN