Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1181 |
Symbol | rumA |
ID | 5661580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1433451 |
End bp | 1434788 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641235733 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001501043 |
Protein GI | 157961009 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0405802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAAT TTTTTAAAGC AAAACCAAAT AGATCTAAGC AATTATCGTC GAAGTTATCG TTAAAGGTAA CGCAGCTGGA TCACCTCGGG GCTGGCATTG CTCATCACGA CGGTAAGATT GTTTTCATCA ATGGCGCCTT GCCAGATGAG ACGGTATCGG TGCAGTTAAC TGAGCAGAAG AAGAAATTTT CTCGAGGCAA GTTACTCAAA ATAGAGAAGC GCTCTACCGA GCGTGTCACT CCGCCGTGTC CACACTTTGA TAAATGTGGT GGTTGCGACC TGCAGCACCT CGACATTGAG GCTCAGCGCA AACATAAGGC TAATACGCTC GTCGACTTAG TGAATAAATT TGCTCAAACC CAGGCCAGTG AAGTCTGCGC TCCACTCAGC GGTGACGCTT GGCATTACCG CCGCCGTGCG CGCCTAGCGA CCTGGTTCGA TAAGAATACT AAGCACATTA GTTTGGGCTT TAGGGCGAGT AGCAGCAGCG ATGTGGTGGA GATCCAGTCT TGTGCGGTAT TAGCTGAGCC CTTATCGGCC TTAATTCCAG ACTTGGCTTT TATGCTTAAT CAGTTAAGCG GTAAAAAAGC CTTAGGCCAC GTTGAGCTGA CTCAAGCCGA TAACGGCAAT TTTGTTGTGC TACGTGTGAC TAAGGTTCTG TCAGATAAAG ATAAGGCTCG ATTAGTTGAA TTTGCGAATA AGCATGAGGT TATTGTGCTG CTGCAAGATG ATGATGCTCA GTGCGAACAC CTAAATGGCG CGGGTGAGCA ACCATTTTAT GCCTTATCGG GCAGTGACAT TAAGCTTAAC TTCTCCCCGG GTAACTTTAT TCAAGTAAAT GGTCCGGTAA ACCAAGCTAT GGTGAGCCAG GCTGTTGAAT GGTTGTCGCC AAAAGCGGGT GAGCGAGTGC TAGATCTTTT CTGTGGTATT GGTAACTTCA GTTTGCCACT TGCCAAAGAT GGCGCCGAAG TGATTGGTGT CGAAGGGGTT GTGGCTATGG TCGAGCAGGC AAGAGTTAAT GCCAAGCAGA GCGGTTTAGA TAAAGTTGCT TTCTATCATG CCGACTTGAG TGCCGATCTG TCAAAAGAGC CATGGCTAGG CAAGGTCGAT AAGATGTTAA TCGATCCCGC TCGTGCGGGG GCTTATGAGA GCATGCAATC ACTGAAAAAG CTAAAACCTA AAGCCTTAGT CTATGTTTCT TGTAATCCTG CGAGTCTTGC CCGCGACAGT GAAGTGATAT TAAAGCAAGG TTACCAGCTT AAAAAAATTG GTTTAATCGA TATGTTCCCA CAGACACATC ACTTAGAGTC GATGGCGTTG TTTGAGTTAG GAAATTAA
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Protein sequence | MAQFFKAKPN RSKQLSSKLS LKVTQLDHLG AGIAHHDGKI VFINGALPDE TVSVQLTEQK KKFSRGKLLK IEKRSTERVT PPCPHFDKCG GCDLQHLDIE AQRKHKANTL VDLVNKFAQT QASEVCAPLS GDAWHYRRRA RLATWFDKNT KHISLGFRAS SSSDVVEIQS CAVLAEPLSA LIPDLAFMLN QLSGKKALGH VELTQADNGN FVVLRVTKVL SDKDKARLVE FANKHEVIVL LQDDDAQCEH LNGAGEQPFY ALSGSDIKLN FSPGNFIQVN GPVNQAMVSQ AVEWLSPKAG ERVLDLFCGI GNFSLPLAKD GAEVIGVEGV VAMVEQARVN AKQSGLDKVA FYHADLSADL SKEPWLGKVD KMLIDPARAG AYESMQSLKK LKPKALVYVS CNPASLARDS EVILKQGYQL KKIGLIDMFP QTHHLESMAL FELGN
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