| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1171 |
|---|
| Symbol | |
|---|
| ID | 5661570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1417740 |
|---|
| End bp | 1420280 |
|---|
| Gene Length | 2541 bp |
|---|
| Protein Length | 846 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641235723 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_001501033 |
|---|
| Protein GI | 157960999 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.229503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTA GTAAAATAAA AAAAGAAATT TATGAGGGAA TACTAAGTGG TAATGTCTCG
AAATCTATTA TCGATAACCT TGTTAGGCCA GACGGTTCAT TTCTTTCAAA AGAATGTGAG
CTTTGGGACT ATAAAAAAAC TTTCGAAGAT ACTAAGGATG CAACTCTAAA AACTCTAAAA
TCAATAATTA GCTTTCATAA TACTTATGGG GGCTACTTAA TTTTTGGTGT AGATGAGGTT
GAGAAGGATA CTTCTTTCGT TCTGAGTGGC GTGGAAAAGA ATCTAATTGA TCAGCAAAAA
TTGCGAGGAC AGTTTGATAG ATACTTCAAT CAAAGACTTG ATCTCACATA TGAAGAAATC
GTCATTTCTT CCGATAAAGG TGATTTGATT ATTGGTTTGC TTCATATCCC TAAAAGAAGT
AAAAAAAACC ATTCAATAGC TTCGATAGTT GATGGTGTTA ACTCCAAGGG AAAAGTGATT
TTAGAGAAAG ATACCGTCTA TATTAGAAAG ATAGATGAGT GTAAAAGAGT TGTCTCCCAA
GCAGATTTCG AATTTCTTGT TTCTGATAGA CATTTTGACG CTGAACACGG TGTGCCAAAG
AAAATAAGAA AAAATATAAT TGAACACAAC CTCCCCGACA AAAACTTCAT TTGCCCTGAT
TTCATCGGGA GATTTGAAAT CCTCCAAGAG CTTTGGTCTT GGCTATCTGA TGACTTTAAA
TATACGAATG TCTTAGCAGC TGATGGTGGT AAAGGAAAAA CATCAATTGC TTATGAGTTT
TCGCAACTGA TCATTCAGTC TGGTACTGAT CTTTTTGAAC AAGTAATATG GCTTACCGCA
AAAAAACAAC AGTTCAAAGC TGTTTATAAT CAATATGTTG GTGTTCCAGA GACACACTAT
AAAGATCTCG AAACTCTTCT TAAAGAGGTG TGTTTAAGAA CTGGATATTT ACAAGATGAA
GTAAGTGAAT TTACTTTGCA GCAATTGCAA AGGGCTGCAA GAGATGGATT AGCTTTGATT
CCATCATTTG TTGTTGTGGA TGATATTGAC TCCAATTCAC CTGAAGAGCA AAAGCGTATT
ATGGAGATCG CTCGCTCTAT TTCAAGTACA TCATCTAGAG TGTTAATGAC CACACGAGCC
AATAATATTT ACTCTAGTGA TTCTTCTATA TTAGTCCCAG GCTTAAGAGG TAAAGAGTAT
ATAGAGCTCG TTAACACTTT ATGCGATGCT ATCGGTCTGC CAAATTTTAA TGAGAAAAAC
ATTGGGAAAT TGAATGTAGC CTCAGAAGGC TCACCATTGT TTACGGAATC AATACTTAGG
TTATGTAAGT TAGGTCTCTC GCTCGAAGGA GCTATTGAAG ATTGGTCAGG AAAGAGTGGA
GATACCGTTC GCGAAGCTGC ATTAAGAAAA GAAGTATCAG AGTTATCTCC AGAAGCAATA
AAAATATTAT TAACCATTTG CTACGTAGGT GATTTATCCC GTAGCGAACT ACATCAATAC
ACTGATTTTG AGAATTCAGA AGTTAACATT GCACTTGAAC AGCTCGGAAA TCTATTTCTC
GTAAGTAGCA TGGGATTTAT TGAAGAGGAA CCTCGGTTTG AAAGTACATC ATCAATAAGT
AAGTTAGTAC TATCAATAGC AAACGAGATC GTTCCCAATT CTGAAGCATA CATAAAGAGG
ATTCGAGAAA TTGGTGAAGG TTTAGAAGCA AATACTCGGG TTCACATTCC AGAGGTAGGG
GCTGCCGTGA GGCAATGCAA TTCTCTTCTT GCAGCAGAAA GATTTAGTGA TTCGAGAAAT
ACCGTACGCG CACTTATAAA GAAGCCACGC TTTAAAGAAA ATAGTGATCT TTACTTTATT
CTTGCTAAAA CAGATTATGA AGACCCTTTA GTTAGTGATG AGGTTGCAAG AAAGTCTTTC
GTTGAAGCGT TTATTAAAGG GCAAAGGAAG CCTGCTTTTT TTGAAATGTG GTATCAGACA
GAAGTTAACA GTGGAAGTAG CCGTTCGATA TTGGAAGTTT GTGAAAGTGC GCTTCGTAGT
ATTGGTAAAT TTGATTCTCA ATGGGCTGAA AGGTGTGCTG TTGCGAATTA CAACCAAGCA
AGTAATACTA AAAATTATGA AAACAAGGTT AGATATCTTG TTTCTTGCTA CGGACAGCTA
TCCAAGCTTC TGAAAATTTC AAAGAGAGGT AAGTGGGAAG AACATAAACA ATTAAGTGTA
AAAGTAGTTG ATGCTTTATG GGATGAATCG ATGAATAACT CCAAGTATGA AATAGCTGGC
AGCGCAATAA TAAACGCTGT TAATGGAGGA GATATTAGAA GTGTAAACTT TAACCGAATG
ATTGAGGTAT CCCATTTTTT TGTAGATGAA AAATTGGTTT CTGAGACTGC TTTTCGTGAA
CTTAGAGATA ATCTGGAGTG GGCACCTCAG ATTTTACGAA GTGGTGCTGG AAACAGAGAG
CCGCTAGCAA TAAAGCTTGA GCAAACATAT AGAAATATGA AAGGGTCAAT GCGTAACAAG
AAACTAAAGG TAACAGCCTA G
|
|---|
| Protein sequence | MDVSKIKKEI YEGILSGNVS KSIIDNLVRP DGSFLSKECE LWDYKKTFED TKDATLKTLK
SIISFHNTYG GYLIFGVDEV EKDTSFVLSG VEKNLIDQQK LRGQFDRYFN QRLDLTYEEI
VISSDKGDLI IGLLHIPKRS KKNHSIASIV DGVNSKGKVI LEKDTVYIRK IDECKRVVSQ
ADFEFLVSDR HFDAEHGVPK KIRKNIIEHN LPDKNFICPD FIGRFEILQE LWSWLSDDFK
YTNVLAADGG KGKTSIAYEF SQLIIQSGTD LFEQVIWLTA KKQQFKAVYN QYVGVPETHY
KDLETLLKEV CLRTGYLQDE VSEFTLQQLQ RAARDGLALI PSFVVVDDID SNSPEEQKRI
MEIARSISST SSRVLMTTRA NNIYSSDSSI LVPGLRGKEY IELVNTLCDA IGLPNFNEKN
IGKLNVASEG SPLFTESILR LCKLGLSLEG AIEDWSGKSG DTVREAALRK EVSELSPEAI
KILLTICYVG DLSRSELHQY TDFENSEVNI ALEQLGNLFL VSSMGFIEEE PRFESTSSIS
KLVLSIANEI VPNSEAYIKR IREIGEGLEA NTRVHIPEVG AAVRQCNSLL AAERFSDSRN
TVRALIKKPR FKENSDLYFI LAKTDYEDPL VSDEVARKSF VEAFIKGQRK PAFFEMWYQT
EVNSGSSRSI LEVCESALRS IGKFDSQWAE RCAVANYNQA SNTKNYENKV RYLVSCYGQL
SKLLKISKRG KWEEHKQLSV KVVDALWDES MNNSKYEIAG SAIINAVNGG DIRSVNFNRM
IEVSHFFVDE KLVSETAFRE LRDNLEWAPQ ILRSGAGNRE PLAIKLEQTY RNMKGSMRNK
KLKVTA
|
|---|
| |