| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1163 |
|---|
| Symbol | |
|---|
| ID | 5661562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1408714 |
|---|
| End bp | 1409379 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641235715 |
|---|
| Product | riboflavin synthase subunit alpha |
|---|
| Protein accession | YP_001501025 |
|---|
| Protein GI | 157960991 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000497127 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACTG GGATTATTGA ATCAGTCGGA CACCTACGAA AAGTTGAGCG TCGCGGCGAT
GATATTCGCT TAACGGTAGC CAGTGGTAAA CTGGATCTGT CAGACGTAAA ACTGGGTGAC
AGTATCGCCA CCAATGGTGT GTGCCTAACA GTGGTTGAGC TGATGAGCGA CGGTTATGTG
GCAGATATTT CTGCAGAAAC TGTCACTTTG ACGGGCTTCT CTCATTATCA AGTAGGAAAA
GCCGTTAACC TTGAGAAGGC CGTGACCCCT ACAACTCGTT TAGGCGGGCA TATGGTCAGT
GGTCACGTAG ATGGTATCGC TCATGTGGAT GATAGACAGT TTCGTGGCCA AGCCATCGAA
TTTTGGCTAA GCCCACCTGA GGAACTTGGC CGTTATATCG CCCATAAAGG TTCGATTACC
ATCGATGGTG TGAGTTTGAC GGTTAATGAG GTGCAAGGTC ATCGTTTTAG ACTGACTATC
GTGCCGCACA CCGCAGGCGA AACCACTTTA GTGAATCTGA AAGCCGGTGA TAGCGTGAAT
ATTGAAGTGG ACTTGATTGC ACGTCACTTA GAAAGGTTGA TGAGCTACGG CAGCCAAGAG
CAAGACAGCG CTCCTAAGTC GGAAGTGACG ATGGAACTGT TAGCTCGCTC AGGATTTTTA
CGATAA
|
|---|
| Protein sequence | MFTGIIESVG HLRKVERRGD DIRLTVASGK LDLSDVKLGD SIATNGVCLT VVELMSDGYV
ADISAETVTL TGFSHYQVGK AVNLEKAVTP TTRLGGHMVS GHVDGIAHVD DRQFRGQAIE
FWLSPPEELG RYIAHKGSIT IDGVSLTVNE VQGHRFRLTI VPHTAGETTL VNLKAGDSVN
IEVDLIARHL ERLMSYGSQE QDSAPKSEVT MELLARSGFL R
|
|---|
| |