| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1162 |
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| Symbol | |
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| ID | 5661561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1407589 |
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| End bp | 1408710 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641235714 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001501024 |
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| Protein GI | 157960990 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00211394 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGGTCTA TCGAAGACAG TCAAATGATG AGCCTTGCCA TTGAATTGGC ACAAAAGGGC
ATGTACACCA CTCGTCCAAA TCCTAGCGTG GGGAGTGTTA TCGTTAAAGA CGGTGAGATC
GTTGGTGAGG GCTACCATAT TCGAGCCGGC GGTCCTCATG CGGAAGTTTA CGCCTTGAAT
ATGGCGGGCA GTGACGCTAA AGGCGCCACC GCCTACGTAA CACTTGAACC TTGTAGCCAT
TACGGTCGTA CGCCACCTTG CGCCAAGGCG TTAATCGAAC ACGGCGTCAG CCGAGTGGTT
ATTGCGGTGA CCGACCCGAA TCCTGAAGTC TCTGGCCGTG GTATTGCTAT GTTGCGGGAT
GCGGGTATTC GAGTCGATGT TGGGCTGATG ACCGAAGAAG CTAAGCAGGT CAACCTAGGC
TTTTTAAAGC GTATGGAAAA AGGCCTGCCT TGGGTGACAG TTAAACTTGC CGCCAGTCTC
GATGGCAAAA CGGCCTTGTC TAACGGCGTA TCCAAGTGGA TTACCGGCCC TGAAGCCCGC
CGTGATGTAC AGCGTCTTCG TGCTCGCCAT TGCGCTTTAG TCACTGGCGT TGAAACCATA
CTTGCCGATG ACCCCAGTTT AAATGTGCGT CACAGTGAGT TAGGCTCACT TGCAAGTCAA
CTCGCCCCAG CCGAAATTCA CCAGCCACTT AGGGTGGTAT TAGACAGTCA GGCGCGTTTA
GGTCATGAAT TAAACCTGTT TAAAATCGAC AGTCCGATTT TACTGGTGTC GACTCAAGCT
TATCCCGAGA GCGTGCAGGC CGCATGGCCG CCTCATGTGC AGAGTCAGGT ATTAGCGGCG
GTTGATTCAC GTATCGACTT AAATGCGTTA TTAAGCCTAC TGGGTGAGAG TTGTAACTCT
GTGTTGGTTG AAGCTGGTGC GACGCTTGCG GGGGCCTTTG TTAATCAAGG GCTAGCCGAT
GAGATTGTAC TGTATCAGGC GATGAAGATT TTAGGCTCGC AAGGGCGAAA CCTGCTGACA
CTTGATGATT TTCAAGCCAT GTCAGAGGTG CCAAAGATTA ACCTAATCGA TGAGCGCAAA
GTGGGGCCAG ACACCCGCTT AACGTTAAGA GTGAGTAATT AA
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| Protein sequence | MWSIEDSQMM SLAIELAQKG MYTTRPNPSV GSVIVKDGEI VGEGYHIRAG GPHAEVYALN
MAGSDAKGAT AYVTLEPCSH YGRTPPCAKA LIEHGVSRVV IAVTDPNPEV SGRGIAMLRD
AGIRVDVGLM TEEAKQVNLG FLKRMEKGLP WVTVKLAASL DGKTALSNGV SKWITGPEAR
RDVQRLRARH CALVTGVETI LADDPSLNVR HSELGSLASQ LAPAEIHQPL RVVLDSQARL
GHELNLFKID SPILLVSTQA YPESVQAAWP PHVQSQVLAA VDSRIDLNAL LSLLGESCNS
VLVEAGATLA GAFVNQGLAD EIVLYQAMKI LGSQGRNLLT LDDFQAMSEV PKINLIDERK
VGPDTRLTLR VSN
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