| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1150 |
|---|
| Symbol | |
|---|
| ID | 5661549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1388659 |
|---|
| End bp | 1389813 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641235702 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001501012 |
|---|
| Protein GI | 157960978 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGTT CATCAGTTTC AAAAACTAAG TTGTGGATGT TAGTTATTAG CGCCCTCGCA
ATATCTGCCT GTGGAGACGC CCCTGCGCCA CAACAAGCAG TGATTCCAAG TGTCATCGTT
AATACCGCTC ACAAAGAAAT GATCACGCCT AAGTCTGAAT TTGTCGGCCG AACCAGAGCA
TCTGAAGACG TGGTGATTAA ACCGCAGATC CAGGGCCAGT TATTACGACG TAGTTATATT
GAAGGCGATG ATATTGCCGC AGGCGATCTC TTGTTTGAAA TCGACCCATC GACCTATAAA
GCGGAGCTTG CTCAGCATCA AGCCGTATTA AAGCAGGCGG TTGCATCGAG GGACGTGGCG
GTAATGAACT GGGAACGTGG TCGCCGGTTA CTGCCCGATG GCATGATCAG TGCGCAGGAT
ATGGATGAAT TGACCAGCCG TAAGCTCACG ACTGCTGCAG GCGTTGTGCA AGCCGAAGCG
GCAGTAGATG CTGCAGAGTT GCAATTAAGT TATACCAAGG TTTACGCGCC TATTTCTGGC
CGTATAAGTC ATTCTAAAGT CAGTATTGGC GACATCATTA CTCCCCAGTC TGAAATGGCT
AATATCGTGC AGCTCCAGCC GATGTGGGTC AATTTTCAAG TGGCAGAGAA AGGGCTTATC
ACGGCACAAC AGCAATTTTC TCAGGCTAAG AATATCGATA TGAAGATTGA AGATCTTGTT
ATGAGGCTGC GCCTGCCTAA CGGCACCATG TTTGATGAAA CAGGTCATAT CGACTTTATT
GGTAACCGAG TCGACGCAAC GACAGGTACC TTAGCTGTAC GTGCCACATT TAAAAATGCC
AATAGCTTAA TGTTGCCGGG CCTTTTTGTA ACCTTAGTGG TTGAATCACC AATCACTGAA
AATGCGCTAC TTATCCCTCA GGCTTCGGTT CAGGAAGATC AACAAGGTCG TTTTGTGATG
GTGTTAAACG ACCAAGATGA AGTACAAAAA CGCCTAGTTG TACTAGGCGA CCGTTTCGGT
GTCGAGTGGC GTGTACTCAG TGGCCTAGAA GATGGTGATC GTATCGTGGT CGAGGGATTA
CAGAAAATTC GCCCAGGTAT GAAAGTGAAC CCTGTTGAAC AAGAAGTTGT TCCCTTTAAA
GAAGATGACA AATAA
|
|---|
| Protein sequence | MAGSSVSKTK LWMLVISALA ISACGDAPAP QQAVIPSVIV NTAHKEMITP KSEFVGRTRA
SEDVVIKPQI QGQLLRRSYI EGDDIAAGDL LFEIDPSTYK AELAQHQAVL KQAVASRDVA
VMNWERGRRL LPDGMISAQD MDELTSRKLT TAAGVVQAEA AVDAAELQLS YTKVYAPISG
RISHSKVSIG DIITPQSEMA NIVQLQPMWV NFQVAEKGLI TAQQQFSQAK NIDMKIEDLV
MRLRLPNGTM FDETGHIDFI GNRVDATTGT LAVRATFKNA NSLMLPGLFV TLVVESPITE
NALLIPQASV QEDQQGRFVM VLNDQDEVQK RLVVLGDRFG VEWRVLSGLE DGDRIVVEGL
QKIRPGMKVN PVEQEVVPFK EDDK
|
|---|
| |