Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1140 |
Symbol | |
ID | 5661539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1376318 |
End bp | 1377142 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641235692 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001501002 |
Protein GI | 157960968 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.15609 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAACT TGCAAGGGTT AATGGAGCAA GCGCCTGAAC TGATCGTCAC CTACGGTATG AAAGTGCTGT TCGCGATTAT CATTTTTGTC ATAGGTAAAT TCCTATCGAA TGTTGCCAAG AATCTAACAT CTAAGCTGCT GAAAAAGCGT AAAGTCGACA ACACAGTTGT GTCGTTTGTT GCCAATATGG CTTGGGCATT AGTGTTCGTA TTTACCATAG TTGCTACGCT AGGGCAGATA GGTGTGCAAA CCGCTTCGTT AGTTGCTGTG ATTGGTGCCG CCGGTTTAGC TGTTGGTTTA GCACTGCAAG GCTCTTTGTC TAACTTTGCT GCCGGGGTAT TGATGGTACT CTTTAGGCCG TGTCGAGTTG GTGACTATGT GGAAGCGGCG GGCGTTGCTG GTACTGTCGA TGAGATCACT ATCTTTTCAA CCCGATTACT GACTCCTGAT AATAAGGTTA TTATTGCGCC AAATTCAGCC ATGATGAACG GCACTATAGT TAACTACTCT GCGATGGACA CTCGTCGTTT AGATTTAGTT ATTGGGGTTT CTTATGACGC CAATCTTGCC GAGACCAAAA AGGTATTAAC TGACATTCTT GAAAACAGTC AGTATGTGCT CAAAGATCCT GCCTACACAG TGGCTGTGGC AGAGTTAGCC GACTCATCGG TTAACTTCGT GGTTCGCCCC TGGGTTAAAG GCTCTGACTA CTGGCCTGCA CATTTTGAAA TCTTAGAGCA GATAAAGGTC GCTCTAGACG AAGCTGGCAT AGGTATTCCG TATCCACAAA TGGATCTCTA TGTAAAAGAG ACCCCTGCGG CTTAA
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Protein sequence | MDNLQGLMEQ APELIVTYGM KVLFAIIIFV IGKFLSNVAK NLTSKLLKKR KVDNTVVSFV ANMAWALVFV FTIVATLGQI GVQTASLVAV IGAAGLAVGL ALQGSLSNFA AGVLMVLFRP CRVGDYVEAA GVAGTVDEIT IFSTRLLTPD NKVIIAPNSA MMNGTIVNYS AMDTRRLDLV IGVSYDANLA ETKKVLTDIL ENSQYVLKDP AYTVAVAELA DSSVNFVVRP WVKGSDYWPA HFEILEQIKV ALDEAGIGIP YPQMDLYVKE TPAA
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