| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1129 |
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| Symbol | |
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| ID | 5661528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1366461 |
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| End bp | 1367573 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641235681 |
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| Product | twitching motility protein |
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| Protein accession | YP_001500991 |
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| Protein GI | 157960957 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0511874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTC GTCCTTTTCT AAAGGTGATG ATTGAGCGTA AGGCATCGGA TCTATTTATT
ACCGCAGGTT TCCCACCGAG CGCTAAAGTT GATGGTGAGC TGCGCCCCTT AGGTGAGAAT
GCTTTTACTC CTGCCCAGTC GTTAGATTTT GTTGAGTCAT TGATGACTGA TGTGCAAAAG
CAGGAATTTC ACGGGACTCG TGAGTGTAAC TTTGCCTTTT CGGCTAAAGA TCTTGGCCGA
TTTCGTGTCA GCGCCTTTTG GCAGCGTGAG TTTCCCGGCT GCGTGATGCG TCGAATCGAG
ACTCAGATCC CTGAGGTTGA TGACTTAATG TTGCCGCCTA TCTTAAAAGA TTTGGTGATG
AGTAAGCGCG GCTTAGTGAT TTTGGTTGGT GGTACCGGTA CAGGTAAGTC GACCTCGCTT
GCGGCACTGG TCGGCTATCG AAATACCCAT GCCCGCGGTC ATATTCTGAC GATTGAAGAT
CCGGTGGAAT TTGTTCATGA GCATAAGCAG AGCATCATTA CTCAGCGTGA GGTGGGGATC
GATACCGAGT CTTTCGATGC AGCGCTTAAA AGTTCTCTGC GTCAGGCGCC TGATGTGATT
TTGATCGGTG AAATTCGTAG CCAGGAAACT ATGGAGTTCG CGCTGTCTTT TGCCGAGACG
GGTCACCTTT GTATGGCGAC TCTGCATGCT AATAACGCTA ACCAAGCGCT CGACCGTATC
ATGCATTTAG TGCCGGAGAG TAAGCACCAT CAACTGCTGT TTGATTTGTC GTTAAACTTA
CGCGGTATTG TGGCGCAGCA ATTGGTGCCT AAGAGCGATG GCAGCGGAAG GCGTGCGGCG
ATTGAGGTAT TGATTAATAC CCCGCGTGTC GCCAGCTTGA TTGCTAAAAA TGAGCTGCAT
ACCCTTAAAG AAACCATGGC AAAGTCAAAT GAGCAGGGGA TGCAGACCTT CGACCAAGCT
TTGTTAAAGC TCTACAGCGA GGGCGAGATC AGTTACGCCG ATGCGCTGCA TCATGCGGAT
TCACCAAACG ACCTGCGACT GATGATCAAG CTACAAAGCT CAGATACGAC TAGCAGTAGC
TCTATGGATG GGGTCACACT CAATTTAGAC TAG
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| Protein sequence | MDVRPFLKVM IERKASDLFI TAGFPPSAKV DGELRPLGEN AFTPAQSLDF VESLMTDVQK
QEFHGTRECN FAFSAKDLGR FRVSAFWQRE FPGCVMRRIE TQIPEVDDLM LPPILKDLVM
SKRGLVILVG GTGTGKSTSL AALVGYRNTH ARGHILTIED PVEFVHEHKQ SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRSQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHH QLLFDLSLNL RGIVAQQLVP KSDGSGRRAA IEVLINTPRV ASLIAKNELH
TLKETMAKSN EQGMQTFDQA LLKLYSEGEI SYADALHHAD SPNDLRLMIK LQSSDTTSSS
SMDGVTLNLD
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