Gene Spea_1088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1088 
Symbol 
ID5661487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp1316314 
End bp1317303 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content43% 
IMG OID641235634 
Producttype IV pilus assembly protein PilW 
Protein accessionYP_001500950 
Protein GI157960916 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4966] Tfp pilus assembly protein PilW 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACGG ATAATAAATT AAGTCATGCG CAGTGGGGAT TTTCGCTTGT TGAGCTGATG 
GTCGCAATGG TCGTGAGTTT ATTTTTGACT CTTGGTGTTT TCTCAATGTT CGCAATGTCT 
TCTACGAACG TGACAACTAC TAGTCAGTTT AATCAGCTGC AAGAAAATGG CCGAATTGCA 
CTTGCTCTAA TTGAAAGAGA TGTTAGTCAA CTAGGCTTTA TGGGGGATAT GACAGGTACC 
GACTTTGTGC TTGGGATGAA TACAACGATT GACGCCCCTG CTATTGCTGC TGCCAATGAT 
TGTATAGGGG CTGGGGCTAA CAATGCGAGC TTTCCAAATA ATCAGGCTGC TCATTTTAGA 
CGCATTTGGG GTTATGAACA TAGCGCTGGA GGTGGGGGAA TGGCATGTAT TCCTGATGTA 
TCAGTCGATA CCGATGTATT GCAAGTTAAG CGGTTAATCG GACCGTCTAT AGCGCCTGCT 
GCACTGAATT CAAATCGCTA TTATATGGCG ACAACGTCTA GCCAGGCCGT TATTTTTGCC 
GGAGATCAAG CTGTACCGCC GCTAACTAAC TCCCGAATTT GGGAGCTTCA ACATCATGTG 
TATTTCATAC AAACTGATAA TAATGTGCCC GTACTTATGC GTAGAGTGTT AGGTAAAGGC 
GGAATGAAAT CAGGAAGTAG CTATGAACAA CTCGTTGAGG GGGTAGAAAA TATTAGAGTT 
ATGTATGGCT TTGATAGTAA CGGCGATAAG AGTGCTGATA GCTTTAGGCC AGCACAAAGC 
ACTACAAGCT TTATGTGGGA TAACACCGCT TTACAGCGTT TAGTCGCGGT TCGTATTTAT 
GTATTAGTGC GCTCTCTTGA AGAAGATAAT AGTTATACAA ACAACACCGT TTATACGCTT 
GGTGACAAAG AAATAGCGGC AAATGGTGAT GGTTTTCGTC GCAAGGTCGT TATGACCACC 
GTCGTGCTTG AAAATCCCAT TTTGCTTTAG
 
Protein sequence
MNTDNKLSHA QWGFSLVELM VAMVVSLFLT LGVFSMFAMS STNVTTTSQF NQLQENGRIA 
LALIERDVSQ LGFMGDMTGT DFVLGMNTTI DAPAIAAAND CIGAGANNAS FPNNQAAHFR 
RIWGYEHSAG GGGMACIPDV SVDTDVLQVK RLIGPSIAPA ALNSNRYYMA TTSSQAVIFA 
GDQAVPPLTN SRIWELQHHV YFIQTDNNVP VLMRRVLGKG GMKSGSSYEQ LVEGVENIRV 
MYGFDSNGDK SADSFRPAQS TTSFMWDNTA LQRLVAVRIY VLVRSLEEDN SYTNNTVYTL 
GDKEIAANGD GFRRKVVMTT VVLENPILL