Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1086 |
Symbol | ispH |
ID | 5661485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1314577 |
End bp | 1315506 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641235632 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_001500948 |
Protein GI | 157960914 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTC TTCTGGCAAA TCCTCGTGGT TTTTGTGCAG GTGTTGATCG CGCCATTAGT ATTGTTGAGC GCGCATTAGA GTTATTTTCT CCACCTATTT ATGTCAGGCA CGAAGTGGTT CATAACCGCT ACGTGGTGCA GAACTTGAAA GAACGTGGTG CCGTGTTTGT CGAAGAGCTA GATCAAGTAC CAGACGATAG CATCGTTATC TTTAGTGCTC ATGGTGTATC TCAAGCCGTT CGAGCCGAAG CTAAGAGACG CGGCTTAAAG GTGTTCGATG CGACTTGTCC TCTTGTCACT AAGGTTCATC TACAGGTCGC TCGTGCAAGC CGTAAAGGTA TTGAGTGCAT CTTAATTGGT CATGCAGGAC ACCCTGAAGT GGAAGGCACC ATGGGTCAGT ACGACAACTC TGCTGGTGGC GTACATTTAG TTGAGTCACC TGAAGATGTA GCAAAGCTTG TGGTCAAAGA TCCTGACAAC CTTTGCTTTG TGACTCAAAC AACCTTATCA ATGGACGATA CCGCGGATGT GATCTCGTCT TTACAGAAAA AGTACCCTTC AATCGAAGGG CCGCGTAAGG ATGATATCTG CTACGCGACG CAGAACCGCC AAGACGCAGT TCGCAATGTT GCTGAAGAAG TGGAACTATT TATCGTCGTT GGCTCCAAGA ACAGTTCTAA CTCAAATCGT CTGCGTGAGT TAGCACAGAA GAAAGGCACA CAAGCTTTCT TAGTGGATAA TGCCGATGAC GTGGATGCCA CATGGTTTAA TGGCGTAGAA CGCGTTGCCG TAACCGCTGG GGCATCTGCG CCAGAGGTCT TGGTTAAGCA GGTTGTCGAT GCGATTGCTA AAATGGCACC GAGCGTAGTA ACAGAGGTCG AAGGTCAACT CGAAGATACT GTTTTCGCGG TACCTGCTGA GCTTCGTTGA
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Protein sequence | MNILLANPRG FCAGVDRAIS IVERALELFS PPIYVRHEVV HNRYVVQNLK ERGAVFVEEL DQVPDDSIVI FSAHGVSQAV RAEAKRRGLK VFDATCPLVT KVHLQVARAS RKGIECILIG HAGHPEVEGT MGQYDNSAGG VHLVESPEDV AKLVVKDPDN LCFVTQTTLS MDDTADVISS LQKKYPSIEG PRKDDICYAT QNRQDAVRNV AEEVELFIVV GSKNSSNSNR LRELAQKKGT QAFLVDNADD VDATWFNGVE RVAVTAGASA PEVLVKQVVD AIAKMAPSVV TEVEGQLEDT VFAVPAELR
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