| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1080 |
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| Symbol | rpsT |
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| ID | 5661479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 1307577 |
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| End bp | 1307843 |
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| Gene Length | 267 bp |
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| Protein Length | 88 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641235626 |
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| Product | 30S ribosomal protein S20 |
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| Protein accession | YP_001500942 |
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| Protein GI | 157960908 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0268] Ribosomal protein S20 |
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| TIGRFAM ID | [TIGR00029] ribosomal protein S20 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00000335633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGGCTAATA GCAAGTCTGC AAAGAAGCGC GCGCTTCAAT CTGAAAAGCG TCGCCAACAC
AACGCTAGCC GTAGCTCAAT GTTACGTACT TACGTTAAAA AAGTAATTGC TGCAATCAAT
GCAGGTGACC ACGCGACAGC TACTGCTGCT TTCGCTGTAG CACAACCAAT TGTTGACCGT
ATGGCGACTA AAGGTCTTAT TCACAAGAAT AAGGCTGCTC GTTATAAGTC ACGCTTGAAT
GCTAAAATCA AAGCTCTAGT AGCTTAA
|
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| Protein sequence | MANSKSAKKR ALQSEKRRQH NASRSSMLRT YVKKVIAAIN AGDHATATAA FAVAQPIVDR
MATKGLIHKN KAARYKSRLN AKIKALVA
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