Gene Spea_1037 details

Gene Information

• Locus tag: Spea_1037
• Symbol: rnc
• ID: 5661436
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 1260111
• End bp: 1260788
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 641235583
• Product: ribonuclease III
• Protein accession: YP_001500899
• Protein GI: 157960865
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00165891
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCGA TTAAGAACAT TCCACGTTTG TGCCGTACTT TAGGGTACGA GTTCAATGAA 
AAAGCATTTT TAGACCAAGC ATTGACTCAT AGAAGTGCCT CTAATAAGCA TAATGAGAGA 
TTAGAGTTTC TTGGAGATTC TATTCTGTCT ATCGTGATCT CTGATGCCCT TTATCATCAG 
TTCCCAGCGG CCACCGAAGG TGACCTAAGC CGTATGCGCG CAACACTCGT TTGCGGCAAG 
ATGCTGGCAG AAATCGCTAT CGAATTTAAG CTTGGCGATT ACCTAAAGCT AGGTCCTGGA 
GAGTTAAAAA GTGGCGGCTT TAGACGAGAG TCAATTCTAG CCGATGCGGT AGAAGCGATT 
ATCGGTGCAA TTTATCTCGA TTCTGATATT GAGAATTGTC GTCAGTTAGT GCTTAACTGG 
TACGAGTCGC GCCTAAAGGT TATTGAGCCT ATAAATCAAA AAGATCCAAA AACATTACTG 
CAAGAGTATT TGCAGAAATA TAGAAAACCA CTGCCAGTTT ATAGAGTGGC CCATACTGAA 
GGCGATGCTC ACGAGCAGAC TTTCACCGTT GAATGTATTG TTGAAGACTT GAGCCAAGCC 
GTTGTCGGAG TAGCCAGTTC GCGCAGAAAA GCGGAACAGA GTGCTGCGGC TCAAGTGTTG 
GAGTTAATTA AGAAATGA 

 

Protein sequence

MEPIKNIPRL CRTLGYEFNE KAFLDQALTH RSASNKHNER LEFLGDSILS IVISDALYHQ 
FPAATEGDLS RMRATLVCGK MLAEIAIEFK LGDYLKLGPG ELKSGGFRRE SILADAVEAI 
IGAIYLDSDI ENCRQLVLNW YESRLKVIEP INQKDPKTLL QEYLQKYRKP LPVYRVAHTE 
GDAHEQTFTV ECIVEDLSQA VVGVASSRRK AEQSAAAQVL ELIKK