Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1033 |
Symbol | |
ID | 5661432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1255722 |
End bp | 1256654 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641235579 |
Product | sigma E regulatory protein, MucB/RseB |
Protein accession | YP_001500895 |
Protein GI | 157960861 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3026] Negative regulator of sigma E activity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0190617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGTCTAA TCCTATTGGC TATTATAGCC ATGAGTTTTC CCGCGATGGC GCGGGAAGAC ATGCCCGCCA AAGCTTGGCT AGAAAATATG AGCCAAGCCC TGCGTGAACA AGAATTTAAA ATTTCCCTTA TCCAACTTCA GGCAGACCAT ATCCGCCCTC TGGTTTATAT ACACGGTAAA GTTGAAGATG AAGAAGTGGC CTTTTTAGAA CATCTAAATG GACCACCTAA AAATGCTGTG CGTGTGGGTA ATACCGTGAC CTTCATTGAG CATGACCAAC CCGCTTATAG TGTTCACTCT AATCGCATTC AGGGCGTTAT CCCTGGAGCA TTAGCCGACG ATGTCTCCAA GCTGGAAGAG GGCTATCAGT TCGTGTTGGG TGGTCGTAGC CGAATTGCAG GTCGACCAGG TCAGCTTGTA CGTATCATTC CGACCGACAA TAACCGTTAT GGTTATCAAG TTTGGATGGA TATGGATACA TACTTGCCGC TGCGTTTCGA CATGATAAGT GGTGACAAAC AACTATTAGA GCAGCTGTTA GTGGTTGAAC TATTAGTGCT TGATGAAGTA CCTGCTATTC TAAAAGAAGC CTACAAGCAG GAGTGGCCTC CTGTCTTGTC TCAATCAGAC AGAGACGGCG GCGAAGACTG GCAGTTTAGC TGGTTACCAG CAGGCTTTAA GGTGCTGATT AAAGATCAAC ACAGGCTAAT AGGCAGTAAG GAAGCGGTTG AGTACATAGC CATAAGTGAT GGTCTAGCTC ATATTTCTGT TTACGTTGCC AAGGCGGGGG AGGCACCACT GCCAGAGGAG TTAGTGACCC GCAATGGATT ATCACTTGCA ACAGAGCGAG TTGGTAATGC CGAGGTGGTT GCAGTGGGTA AGGTTCCTGC TGAGACCTTG AGTCGCATTG CTAAAAGCAT CATGTTGCAG TGA
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Protein sequence | MRLILLAIIA MSFPAMARED MPAKAWLENM SQALREQEFK ISLIQLQADH IRPLVYIHGK VEDEEVAFLE HLNGPPKNAV RVGNTVTFIE HDQPAYSVHS NRIQGVIPGA LADDVSKLEE GYQFVLGGRS RIAGRPGQLV RIIPTDNNRY GYQVWMDMDT YLPLRFDMIS GDKQLLEQLL VVELLVLDEV PAILKEAYKQ EWPPVLSQSD RDGGEDWQFS WLPAGFKVLI KDQHRLIGSK EAVEYIAISD GLAHISVYVA KAGEAPLPEE LVTRNGLSLA TERVGNAEVV AVGKVPAETL SRIAKSIMLQ
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