| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1031 |
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| Symbol | |
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| ID | 5661430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1254502 |
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| End bp | 1255080 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641235577 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001500893 |
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| Protein GI | 157960859 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000464646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAGTTA GTTGAGCGCG TACAGCGTGG AGACAAAAAC
GCTTTTAACC TTTTGGTACA GAAATATCAA AACAAGGTCG CGAATCTGAT ATCTCGTTAC
GTACGAAATC AGGCCGACGT TGCCGATGTT TCGCAGGAAG CTTTTATTAA AGCTTACCGA
GCACTACCAA ACTTTCGTGG TGAAAGTGCG TTTTATACTT GGTTGTACCG CATTGCAGTG
AATACTGCTA AGAATCATCT GGTCGCTCAG GGACGTCGTG CCCCAGCGAA TGATGTCGAT
GCTGAAGAAG CCGAATACTA TGATGGCAGT GACGCGCTAA AGGAGTTTGC CTCCCCGGAG
CGTCTGGTTT TGTCAGAAGA GATTCAAAAG GTTGTCTTCG ACACTTTAGA CACTTTGCCA
GAAGAATTGA AGATGGCTAT CTCACTTCGA GAGCTCGATG GTATGAGTTA TGAAGAGATT
GCCAATGTCA TGGATTGCCC TGTAGGCACT GTAAGATCAC GGATCTTCAG AGCGCGAGAG
GCAATCGATA AAAAGCTTAA GCCGTTGCTA GAACGTTAG
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| Protein sequence | MSGQISDQQL VERVQRGDKN AFNLLVQKYQ NKVANLISRY VRNQADVADV SQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNHLVAQ GRRAPANDVD AEEAEYYDGS DALKEFASPE
RLVLSEEIQK VVFDTLDTLP EELKMAISLR ELDGMSYEEI ANVMDCPVGT VRSRIFRARE
AIDKKLKPLL ER
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