Gene Spea_1025 details

Gene Information

• Locus tag: Spea_1025
• Symbol: nhaA
• ID: 5661424
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 1249284
• End bp: 1250459
• Gene Length: 1176 bp
• Protein Length: 391 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 641235571
• Product: pH-dependent sodium/proton antiporter
• Protein accession: YP_001500887
• Protein GI: 157960853
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3004] Na+/H+ antiporter
• TIGRFAM ID: [TIGR00773] Na+/H+ antiporter NhaA

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACGGG CAATTAGAAA TTTTCTAAGC CAGGAATCGG CAGGCGGCAT TCTCTTGATG 
GTTTCCGTCG TGCTAGCGAT GATTTTAGCA AACTCACCTT TATCGGGTAT GTACCATGGC 
TTTCTGGAAA CAGAAATGCA AGTTCGTGTT GGTAACCTAG ATATCGATAA GACACTTATT 
CATTGGATCA ACGATGGTTT GATGGCTATC TTCTTCATGC TTATCGGCTT AGAAGTGAAA 
AGAGAGCTAC TCGAAGGAGC GTTATCTAGT CGAGCACAGG CATCTTTACC TACGTTTGCA 
GCGATTGGCG GTATGGTTTT CCCAGCGGCT GTTTATCTTA TTTTCAATTA TTCTGATCCG 
ATAACTCAAG TGGGTTGGGC TATTCCGGCT GCGACAGATA TTGCATTTGC ATTAGGTATT 
ATGGCGCTAT TAGGTAGCCG TGTGCCTGTG GCGTTAAAGG TGTTCTTGTT AGCACTTGCG 
ATTATCGACG ATCTGGGTGT AGTGGTAATC ATTGCGCTTT TCTACAGTAC AGACTTATCG 
ACCATCAGCT TAATCATTGC TGCTGCTGCG ATTCTTGGCT TAATAGGCCT AAACCGTAAA 
GGAGTAACCT CATTAGCACC TTATGGCGTA GTGGGTCTTA TTCTGTGGAT TGCAGTATTA 
AAGTCTGGTG TACATGCCAC ATTAGCTGGC GTAATTATCG CCTTCTGTAT TCCGCTTAGA 
GCGAAAGACG GCTCGTCGCC ATCAGAAAGC TTAGAGCACA GTTTGCACCC ATGGAGTACC 
TTCATCATCT TACCAATATT TGCCTTCGCG AATGCTGGCG TAGACTTGAG TGGCATGAGC 
CTAAGCTCAC TCTTATCTCC TGTACCATTA GGTATTGCTT TAGGACTACT GGTTGGTAAG 
CCGCTTGGTA TTATGTTGTT TAGCTATATT GCAGTGAAGC TAAAGCTAGC GGTATTACCA 
GAAGGTATGG GCTGGAGACA CATTACACCT GTTGCTGTGA TGTGTGGTAT TGGTTTCACT 
ATGTCTATGT TTATCTCATC GCTTGCCTTT GTTGGTGAAG GGCAGATGTA CGGAGATTAT 
GCAAGATTAG GGATTTTATT GGGGTCAATA GCATCGGCAA CCATAGGATA TTTCTGGCTG 
TCTAAGGTGC TACCTGAAAA AGGAGCAAAA GCATGA 

 

Protein sequence

MERAIRNFLS QESAGGILLM VSVVLAMILA NSPLSGMYHG FLETEMQVRV GNLDIDKTLI 
HWINDGLMAI FFMLIGLEVK RELLEGALSS RAQASLPTFA AIGGMVFPAA VYLIFNYSDP 
ITQVGWAIPA ATDIAFALGI MALLGSRVPV ALKVFLLALA IIDDLGVVVI IALFYSTDLS 
TISLIIAAAA ILGLIGLNRK GVTSLAPYGV VGLILWIAVL KSGVHATLAG VIIAFCIPLR 
AKDGSSPSES LEHSLHPWST FIILPIFAFA NAGVDLSGMS LSSLLSPVPL GIALGLLVGK 
PLGIMLFSYI AVKLKLAVLP EGMGWRHITP VAVMCGIGFT MSMFISSLAF VGEGQMYGDY 
ARLGILLGSI ASATIGYFWL SKVLPEKGAK A