| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1007 |
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| Symbol | |
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| ID | 5661406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 1223842 |
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| End bp | 1225539 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641235553 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001500869 |
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| Protein GI | 157960835 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCAA CGAATCCACA ATACGACTAT ATTATCGTTG GTGCAGGTAG CGCTGGCTGC
GTGTTAGCTA ACCGCCTATC GGCCGACTCG AATAATCGGG TGTTACTGCT TGAAACGGGT
GGCAGCGATA AGAGCATCTT TATTCAGATG CCTACCGCAC TCTCGATCCC CATGAATACC
AAGAAATACG CTTGGCAATT TGAAACAGAT GCAGAGCCTT ATCTAGATAA CCGCCGCATG
CATTGTCCAA GAGGCAAAGT ATTAGGTGGC TCTTCATCGA TTAACGGCAT GGTGTATGTA
CGTGGCCACG CTCGTGATTT TGACGAGTGG CAAGAGCACG GTGCAAAGAA CTGGGATTAC
GCCCACTGCT TGCCCTACTT CAAGAAAGCC GAAAGTTGGG CATTTGGCGA AGATGAGTAC
CGCTCAGTTG ACGGCCCTCT AGGTGTCAAC AACGGCAACC AGATGAAAAA CCCACTGTAT
AAGGCGTTTG TTGCCGCTGG CGTCGATGCC GGTTACTTAG CGACTAACGA CTACAATGGC
GCGCAGCAAG AGGGCTTTGG CCCTATGCAT ATGACGGTTA AAAATGGCGT ACGTTGGTCT
ACGGCCAACG CCTACCTAAG ACCTGCCATG AAGCGTGAAA ACCTAACCGT TATCACCCAT
GCTCAGGTAC ACAAGATCCT ATTTTCAACT AAGCAAGGTG AAGCTAACAA AGCCGTAGGC
GTACGCTTTG AGCGTAAAGG TAAGATGTTA GAGGTTAACG CCAATAAAGA GGTGGTGTTA
TCGGCAGGCT CGATTGGCTC GCCGCATATC TTGCAACTCT CTGGTATTGG CGCAGCAGAT
ACCTTAGGCA AGGCTGGCAT TGAGCAAATA CACGAGCTGC CAGGCGTAGG TGAGAACCTG
CAAGATCACC TCGAATTCTA CTTCCAGTTT AAGTGCCTCA AGCCTATTTC GTTAAATGGC
AAACTAGACC CGCTGAATAA ACTATTCATC GGTACTCGCT GGATCTTAAA CAAATCAGGC
CTAGGTGCGA CCAATCATTT CGAATCTTGT GGCTTTATTC GCTCAAAAGC AGGGCTAGAG
TGGCCAGATC TGCAATACCA CTTCTTGCCA GCGGCGATGC GTTATGACGG TAAGGAAGCC
TTTGCTGGCC ATGGTTTTCA GGTGCACATT GGCCACAATA AGCCTAAGAG TCGCGGCAGC
GTCAAAGTGG TGTCAGATGA TCCTAAGCAG GCACCTAGCA TTCTATTTAA CTACCTGTCT
CATCAAGATG ATATCGAAGG TTTCCGCGCT TGCGTTCGCT TAACACGAGA GATCATCAAC
CAGCCTGCGC TAGATGAATT TCGCGGTGAA GAGATCCAAC CGGGGAGCAG CGTAGAAACC
GATGAACAGA TAGATAGCTT CGTAAGAAGC GCGGTTGAAA GTGCCTACCA TCCCTCTTGC
ACCTGCAAGA TGGGAGAAGA TGCGATGGCA GTAGTGGATT CAGACACCCG AGTACATGGA
ATACAGGGTC TTAGGGTGGT GGATTCTTCC ATTTTCCCGA CCATTCCAAA CGGTAATCTT
AACTCGCCGA CCATCATGTT AGCCGAGCGT GCCGCCGACT TAATCTTAGG TAATACGCCA
CTGGCGCCAA GTGCAGCCGA AGTGGTTGTG AGTCAGGATT GGCAACAGCA GCAAAGGCAA
AGACCACCAG CAAGATAA
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| Protein sequence | MTATNPQYDY IIVGAGSAGC VLANRLSADS NNRVLLLETG GSDKSIFIQM PTALSIPMNT
KKYAWQFETD AEPYLDNRRM HCPRGKVLGG SSSINGMVYV RGHARDFDEW QEHGAKNWDY
AHCLPYFKKA ESWAFGEDEY RSVDGPLGVN NGNQMKNPLY KAFVAAGVDA GYLATNDYNG
AQQEGFGPMH MTVKNGVRWS TANAYLRPAM KRENLTVITH AQVHKILFST KQGEANKAVG
VRFERKGKML EVNANKEVVL SAGSIGSPHI LQLSGIGAAD TLGKAGIEQI HELPGVGENL
QDHLEFYFQF KCLKPISLNG KLDPLNKLFI GTRWILNKSG LGATNHFESC GFIRSKAGLE
WPDLQYHFLP AAMRYDGKEA FAGHGFQVHI GHNKPKSRGS VKVVSDDPKQ APSILFNYLS
HQDDIEGFRA CVRLTREIIN QPALDEFRGE EIQPGSSVET DEQIDSFVRS AVESAYHPSC
TCKMGEDAMA VVDSDTRVHG IQGLRVVDSS IFPTIPNGNL NSPTIMLAER AADLILGNTP
LAPSAAEVVV SQDWQQQQRQ RPPAR
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