| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0972 |
|---|
| Symbol | |
|---|
| ID | 5661371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1182757 |
|---|
| End bp | 1184433 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641235518 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_001500834 |
|---|
| Protein GI | 157960800 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00176108 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGG CTTTCTTTGG CTTAAATGAC AATCCATTTT CTATCGCGCC AAACCCTCAT
TATCTGTTTC TGAGTGATCG GCATAGAGAA GCTTTGGCAC ATCTTACTTA TGGACTGGGT
GAGACCGGTG GTTTCGTACT GCTCACGGGT GAAGTGGGGA CGGGTAAGAC CACAGTATCT
CGCTGTCTAT TAAAGCAGCT TCCGGATAAT ACCGATACCG CGTTTATATT AAACCCCTCA
CTTACAGAGT CTGAATTGCT GGCCACACTG TGTGATGAGT TAGGAATTGT TTATGGCGAT
GAACCTAGCC TCAAACAGCT GACCGATTTA ATCAGTAAGT TTTTGCTGGA AAATCACAGT
AAAGATCGCA ATACGGTATT GATTATCGAT GAGGCTCAGC ACTTAAGAGC GGAAGTGCTT
GAGCAGTTAA GGTTGTTAAC AAATTTAGAA ACCGATACTA AGAAGCTGTT GCAGGTGATC
TTAATTGGTC AGCCTGAGCT GCAACAGCTA CTTAAGCGCC AAGAGCTGCG TCAGTTAGCG
CAGCGCATCA CCGCCCGTTA TCACCTATTG CCGCTAACAC TTGAAGAGGT AGCGCTTTAC
GTACAGCACC GTTTGCAGGT TGCTGGGCGC CATGAGCCAC TGTTTCATAA GAGTGCGATT
AAGGCGCTAC ATAAATACAG TGGCGGTATT CCAAGATTGA TTAACTTGCT GTGTGAGCGG
GCATTGATGG CGAGCTATGC GCAGTCTAAG GTGCCTATCG ATAACAAGCT GGTACGCCTA
GCCTCTGCTG AGGTGTTAGG TGAAGAGCCT GAGAAGAAGA GTTTGCTACT ACCTGTGAGT
ATCGCAGCAT CACTACTTGC TACTTTTGGT ATTGCGTTTT ATCTGTTTTC ACCAGCAGGC
AGCATTGCTT CAAGCCCCAG TTCAAATCTA AGTCCAAATA CGAATCTGAG CGCAGGTCAA
AGTCAAAGCT CGGCTAATAC TGCCGATACA GTAACAAGTC AAGCTATGGC TCAGGTTCAA
ACGGCTAAGC AAGATATCAA CACCCATAGC TTGAGCAGCA GTCAGCGAGT GCTAAATAGC
GCTATAGCCC AAAGTCATGA GATAGATACG GCTTATGCCA GTATCTTAGG TCTTTGGGGC
AAGGTGCCTT ATATCGGTTT ATCTGCATGT CAGTCGGCTA AGCAGCAAGG GCTTGATTGC
TTTCAGCAGC AGGGCAATTG GCACTCACTT GTGCGACTCA ATTACCCTGC GGTTGTCTAT
TTAGTCGATG ATAACAACCA AGCTTTTTAT GGCACTGTGG TATCTCGCCA AGGGGAGCAA
ATTTTGCTGC AGCTTAATGA GCAGCAGCTC TGGGTGAGTC GAGACTGGTT TACGCGACAC
TTCACTGGCA CCTTCGAGAT CCTCTGGCAA GCGCCTCAAA ATCAGCCTAA AGAAATTGGC
CAGTCTGCCA ATCAGGCGCA GATCCAATGG TTAGAGAATA GTTTGGCGCG CATTAACGAT
AGGGCGCCGA GACTGGTCGA TTATTTTGAC TCTGAGTTAG AGCAGCAGTT AAAGGCGTTT
CAGCGCCAAC ATGGATTGAG CGCCGATGGC ATTGCCGGGA CGCAAACCCT GATACAGCTT
AACTTGTACT TAAGTGATGC CGGACCGCGT CTAGGTCAAA GCAAGAGGTT GTATTAA
|
|---|
| Protein sequence | MYKAFFGLND NPFSIAPNPH YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS
RCLLKQLPDN TDTAFILNPS LTESELLATL CDELGIVYGD EPSLKQLTDL ISKFLLENHS
KDRNTVLIID EAQHLRAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQQL LKRQELRQLA
QRITARYHLL PLTLEEVALY VQHRLQVAGR HEPLFHKSAI KALHKYSGGI PRLINLLCER
ALMASYAQSK VPIDNKLVRL ASAEVLGEEP EKKSLLLPVS IAASLLATFG IAFYLFSPAG
SIASSPSSNL SPNTNLSAGQ SQSSANTADT VTSQAMAQVQ TAKQDINTHS LSSSQRVLNS
AIAQSHEIDT AYASILGLWG KVPYIGLSAC QSAKQQGLDC FQQQGNWHSL VRLNYPAVVY
LVDDNNQAFY GTVVSRQGEQ ILLQLNEQQL WVSRDWFTRH FTGTFEILWQ APQNQPKEIG
QSANQAQIQW LENSLARIND RAPRLVDYFD SELEQQLKAF QRQHGLSADG IAGTQTLIQL
NLYLSDAGPR LGQSKRLY
|
|---|
| |