Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0958 |
Symbol | |
ID | 5664687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 1169239 |
End bp | 1171089 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641235504 |
Product | RNA polymerase, sigma 70 subunit, RpoD |
Protein accession | YP_001500820 |
Protein GI | 157960786 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000123062 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTTAAAT TGTTGCTCGC CAAAGGTAAA GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT TCTGACCAGA TTGAAGATAT TATCCAGATG ATCAATGACA TGGGTATTCG AGTCTATGAA CAGGCTCCGG ATGCTGATGA AATCATGATG TCTGAAGACA GCACCGATGA CGATGCTGCA GAAGAAGCCG CTGCTGCGCT TGCAACAGTT GAAGCAGAAT TAGGTCGTAC TACTGACCCA GTGCGCATGT ACATGCGTGA AATGGGTACA GTTGAACTTC TAACACGTGA AGGCGAGATT GTTATCGCTA AGCGTATCGA AGAAGGTATT AACACGGTTC AAGCATCTGT TGCGGAATAT CCGCAAGCGA TTGCGATGAT CCTTGAACAA TACGATCGCT ACGAAGCTGA AGAAGTTAGA CTTTCTGACA TCATCTCTGG ATTTGTTGAT CCAAATGCAG AAGATGTCGC GCCAACAGCT ACTCATGTTG GTTCTGAGTT ATCTGATGAT GAATTGGATG ATGAAGATGA CGATGACGAT GATGACGATG ACGATGACGA AGAAGAGGAA GGTCCAAAAG GTCCTGATCC TGAAGAAGCT AAAGAGAAGT TTACAACACT TCGTCTAGCC CATGAAAATG CATTAAGAAT TATTGCAGAC AAAGGCCGTG GTCACCCAGA GTCGACCGTA GCACTATTCG AAATTGGCGA GATCTTCAAA GAGTTCCGTT TGATGCCTAA GCAGTTTGAC CGCTTAGTTA AGAACATGCG CTCTATGATG GACAAAGTCC GTGTTCAAGA ACGTTTGATC ATGAAGCTTT GTGTTGAACA AGCCAAAATG CCGAAGAAGA ACTTCGTCAA AGTTTACACT AGCAATGAAA GCAGCATCGA ATGGTTCAAC GATGAACTTG CATCAGGCAA GCCATATGTA GAAGGTCTAC AAATGGTTGA GTTCGATGTA CAACGTTGTC GTGCAAAGCT TGATGCAATT GAAGTTGAAA CTGGTCTAGC TATCGGTGCA ATCAAAGATA TTAACCGTCG TATGTCAATC GGTGAAGCGA AAGCTCGTCG TGCGAAGAAA GAGATGGTTG AAGCGAACTT ACGTCTAGTA ATCTCTATCG CTAAAAAGTA CACCAACCGT GGTCTACAGT TCTTGGATCT AATTCAAGAA GGTAACATCG GTCTGATGAA AGCGGTAGAT AAGTTCGAAT ACCGTCGTGG TTATAAGTTC TCTACTTATG CAACTTGGTG GATCCGTCAG GCGATCACTC GTTCTATTGC TGACCAAGCA AGAACGATCC GTATTCCAGT GCATATGATT GAGACTATCA ACAAGCTTAA CCGTATCTCT CGCCAAATGT TGCAAGAGAT GGGTCGTGAA CCTTCTCCTG AAGAGTTGGC AGAGCGCATG TTAATGCCTG AAGATAAGAT CCGTAAGGTA CTTAAGATCG CTAAAGAGCC GATCTCAATG GAAACACCAA TTGGTGACGA TGAAGATTCG CACTTAGGTG ATTTCATCGA GGATACTACC CTCGAGCTAC CATTGGACTC TGCGACAGGC GAAAGCTTGA AGAACGCAAC TCACGAAGTA CTAGCGGGCC TAACAGCTCG TGAAGCTAAA GTACTGCGTA TGCGTTTCGG TATCGACATG AATACTGACC ACACTCTAGA AGAAGTGGGT AAGCAGTTTG ACGTAACACG TGAGCGTATT CGTCAGATTG AAGCTAAAGC GCTACGTAAG TTGCGTCACC CTTCTCGCTC TGAGATCTTA AAGTCGTTCC TAGACGAATA G
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Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVYE QAPDADEIMM SEDSTDDDAA EEAAAALATV EAELGRTTDP VRMYMREMGT VELLTREGEI VIAKRIEEGI NTVQASVAEY PQAIAMILEQ YDRYEAEEVR LSDIISGFVD PNAEDVAPTA THVGSELSDD ELDDEDDDDD DDDDDDEEEE GPKGPDPEEA KEKFTTLRLA HENALRIIAD KGRGHPESTV ALFEIGEIFK EFRLMPKQFD RLVKNMRSMM DKVRVQERLI MKLCVEQAKM PKKNFVKVYT SNESSIEWFN DELASGKPYV EGLQMVEFDV QRCRAKLDAI EVETGLAIGA IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE PSPEELAERM LMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATG ESLKNATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPSRSEIL KSFLDE
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