| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0863 |
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| Symbol | pdxA |
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| ID | 5661262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 1060949 |
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| End bp | 1061932 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641235408 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_001500725 |
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| Protein GI | 157960691 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0238351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGTCGACTA AACGCATAGC CATCACGCCG GGTGAACCGG CGGGTGTTGG CCCAGATTTA
GTGATACAAC TAGCTCAGCA GGCTTGGCCT GCTGAGCTAG TCGTTTGTGC TGATCCAGAA
TTATTACTGT CTCGCGCCAA GAAGCTTGGG CTTTCTATTC AGTTGCGTCC ATATCAACCG
AATCAACCCC CTAAGGCGCA AGAGGCTGGC ACACTGACAA TCGTGCCTTT TACCCTAGAG
ACTGATTCTG TATGTGGCCA GCTAAATGAA ATTAATAGCG CCTATGTCGT CGATACATTA
AGATTCGCTG GCGAAAAAAA CATGGTTGGC GAATTCGATG CAGTAGTAAC AGGACCCGTT
CATAAGGGGA TTATCAACCA AGCTGGTATT CCGTTTAGCG GCCACACCGA ATATTTTGCC
AATCAGGCAA ACTGCCAAGA TGTGGTAATG ATGCTAGCGG CGCCAGGCTT GCAGGTTGCG
CTTGTGACAA CTCACATACC ATTAGCGTAT GTGTCAAAAG CCATTACTCG CGACCGTTTG
CATCAAATCG TCAAGATTTT ACACAAAGAC TTAGTCGAGA AATTCGCGAT TGAGTCACCT
CGCATCTATG TGTGTGGTTT AAACCCTCAT GCTGGCGAGG ACGGTCATTT AGGCAGAGAA
GAGATAGATA TCATCATCCC TGCACTAAAT GAGCTTAGGG AACTCAATAT GGATATCGTA
GGCCCACTGC CAGCTGATAC CCTGTTCCAA CCTAAATACT TAGAAGATGC TGACGTCGTA
CTCGCTATGT ACCACGATCA GGGGCTTCCA GTACTAAAAT CTAGAGGATT TGGCAGTTCA
GTCAACATCA CTCTAGGATT ACCCTATATA AGAACCTCGG TCGACCATGG TACGGCCTTA
GAGCTTGCAG GCACTGGCAC TGCAGATATC GGCAGCTTTG TCTGCGCATT AAATAAAGCC
ATTGATTTGG CTGCAAAGAA TTAG
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| Protein sequence | MSTKRIAITP GEPAGVGPDL VIQLAQQAWP AELVVCADPE LLLSRAKKLG LSIQLRPYQP
NQPPKAQEAG TLTIVPFTLE TDSVCGQLNE INSAYVVDTL RFAGEKNMVG EFDAVVTGPV
HKGIINQAGI PFSGHTEYFA NQANCQDVVM MLAAPGLQVA LVTTHIPLAY VSKAITRDRL
HQIVKILHKD LVEKFAIESP RIYVCGLNPH AGEDGHLGRE EIDIIIPALN ELRELNMDIV
GPLPADTLFQ PKYLEDADVV LAMYHDQGLP VLKSRGFGSS VNITLGLPYI RTSVDHGTAL
ELAGTGTADI GSFVCALNKA IDLAAKN
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