| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0831 |
|---|
| Symbol | nrfA |
|---|
| ID | 5661230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1030831 |
|---|
| End bp | 1032234 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641235376 |
|---|
| Product | cytochrome c552 |
|---|
| Protein accession | YP_001500693 |
|---|
| Protein GI | 157960659 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
|---|
| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.01441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAAAA CATTAACTAA AAAGTCTTTT GCACTCAGTG CAATCGTAGC TGCAAGTTTA
ATGGCTGGTA GCGCACTAGC CAGTGATAAA ACTGAACCTC GTAACGAAGT TTATAAAGAT
AAGTTTTCAA AGCAGTATAA CAGCTGGCAT GAAACTTCTG AAAGTGTAGA GATCATTGAT
GCACTTGAGC AAGATCCAAA TCTAGTTATT CTTTGGGCCG GTTATGGTTT TGCTAAAGAT
TATAACAAGG CTCGTGGTCA TGTTTATGCA GTAACGGATC TGCGTAATAC GCTACGCTCT
GGTGCTCCTA AGACTGCTGA AGATGGTCCA ATGCCAATGG CATGTTGGTC TTGTAAGAGC
CCTGATGTAC CTCGTATGAT CGAAGAGCAA GGTGAAGACG GTTACTTCAA AGGTAAGTGG
GCTAAAGGCG GTGCAGAAAT CGTTAACTCT ATCGGTTGTT CTGACTGTCA CGAAAAAGGT
AAGTCTAAGC TACGTATCTC TCGTCCATTC GCTGAGCGCG GCATGGAAGC TCTTGGCACT
CCATTCGATG AAGCTTCTCG TAAAGACAAG CAATCAATGG TTTGTGGTCA GTGTCACGTA
GAGTACTACT TCGAAAAGAC TGCTGATAAG AAAGGCTTCG TTAAGTTCCC ATGGGACAAG
GGCACAACTG TTGAAGATAT GGAAGCATAC TATGATGCTA TCGATTTCGC AGATTGGACT
CACGCCGTTT CTAAGACGCC AATGCTAAAA GCACAGCACC CAGGTTATGA AACTTGGCAG
CTAGGTATGC ACGGTAAGAA CAATGTAAGT TGTACTGACT GTCACATGCC TAAAGTTAAG
AATGCTGAAG GCCGTAAGTT TACCGACCAC AAAGTGGGTA ACCCATTCGA TCGTTTCGAA
GAAACTTGTG GTACTTGTCA TGATCAAAGC AAAGAGTTCA TGGTTAACCT AGATAACGAG
CGTAAAGCTA AGGTTAAGCA GATCCAACTT CAAGCTGAAG ATCAGTTAGT TAAAGCTCAC
TTCGAAGCTG GTGCAGCTTG GGAAGCTGGC GCAACTGAAG CTGAAATGGC ACCAATCCTA
ATGGATATCC GTCATGGTCA ATGGCGTTGG GATTATGCAA TCGCTTCTCA CGGTGTTGCA
TCTCACGCTC CAGATGAAGC GTTACGTGTA CTAGGTACTG CGCTAAACAA AGCTGCTGAT
GCTCGCGTTA AGCTAGCTCA ACTTCTTGCT AAGAAAGGTG TTAAGCAGCC TATCGCGCTT
CCAGATATCT CTACTAAAGC TAAGGCTCAA GCTGCTCTAG GTATGGATAT GAAGAAGATG
AATGCTGATA AGGCTGAATT CAAGAAGACT ATTCTACCTA AGTGGGATGC TGAAGCTGAA
AAGCGTGAAG CTACTTACAA GTAA
|
|---|
| Protein sequence | MVKTLTKKSF ALSAIVAASL MAGSALASDK TEPRNEVYKD KFSKQYNSWH ETSESVEIID
ALEQDPNLVI LWAGYGFAKD YNKARGHVYA VTDLRNTLRS GAPKTAEDGP MPMACWSCKS
PDVPRMIEEQ GEDGYFKGKW AKGGAEIVNS IGCSDCHEKG KSKLRISRPF AERGMEALGT
PFDEASRKDK QSMVCGQCHV EYYFEKTADK KGFVKFPWDK GTTVEDMEAY YDAIDFADWT
HAVSKTPMLK AQHPGYETWQ LGMHGKNNVS CTDCHMPKVK NAEGRKFTDH KVGNPFDRFE
ETCGTCHDQS KEFMVNLDNE RKAKVKQIQL QAEDQLVKAH FEAGAAWEAG ATEAEMAPIL
MDIRHGQWRW DYAIASHGVA SHAPDEALRV LGTALNKAAD ARVKLAQLLA KKGVKQPIAL
PDISTKAKAQ AALGMDMKKM NADKAEFKKT ILPKWDAEAE KREATYK
|
|---|
| |