| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0788 |
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| Symbol | |
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| ID | 5661187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 974163 |
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| End bp | 976154 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641235333 |
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| Product | transketolase |
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| Protein accession | YP_001500650 |
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| Protein GI | 157960616 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000527477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCTC GTAAAGAACT CGCAAACGCA ATCCGCGCAT TGACCATGGA TGCTGTTCAA
AAAGCCAATT CAGGTCACCC AGGTGCACCA ATGGGGATGG CTGATATTGC TGAAGTGCTA
TGGAATGATT TCCTAAAGCA CAACCCAAAC AACCCTGAGT GGGTTGATCG TGACCGTTTT
ATTCTTTCTA ACGGCCACGG CTCTATGCTT ATCTACTCTT TGCTACACCT TACAGGTTAT
GCACTGCCTA TCGAAGAGTT GAAAAACTTC CGCCAGCTTC ACTCTAAGAC CCCAGGTCAC
CCTGAATACG GTTACACACC TGGTGTTGAA ACGACTACCG GCCCACTAGG CGCTGGTATC
AGTAACGCTG TGGGTATGGC GATTGCTGAG AAGACATTGG CTGCACAGTT TAACCAGCCT
GGTCACGACA TCGTTGATCA CTTCACATAC TGCTTCCTAG GTGATGGCTG TTTGATGGAA
GGTATCTCTC ACGAAGCGTG TTCTCTAGCC GGCACTTTAG GCCTAGGCAA GCTAATCGCA
TTCTGGGATG ACAACGGTAT CTCTATCGAT GGTCACGTAG AAGGTTGGTT CACTGACGAT
ACGCCTAAGC GTTTTGAGTC TTACGGCTGG CATGTCATTG CTAACGTAGA CGGTCACGAC
AGCGACGCAA TTCGCGCAGC TATCGAAGAA GCTAAGTCTG TTACAGACAA GCCAACGATG
ATCTGCTGTA AAACGACTAT CGGTTTCGGT TCTCCAAACA AGTCTGGCAG CCACGATTGT
CACGGCGCAC CACTAGGTGA TGCTGAAATT GCTGCTGCAC GTGAATTCCT TGGTTGGAAC
CACGGCGCAT TCGAAATTCC TGAAAACGTT TACGCGGGTT GGGATGCTAA AGAAACTGGC
GCTGCGAATG AAGCAAGCTG GAACGACAAG TTCGCTGCCT ATGAAGCTGC TTTCCCTGAA
TTAGCTGCTG AATATAAGCG TCGTGTTATC ACGGGTGACT TGCCTGCAGA TTTCGAAGAA
AAAGCACAAG CTTTCGTTCA AGAGTGTCAA GATAAAGCCG AAGGTATTGC TAGCCGTAAA
GCATCACAAA ATGCGATTGG TGCATTTGGT GCCATCCTAC CTGAAATGCT AGGTGGCTCG
GCAGATCTAG CCGGTTCAAA CCTAACGCTT TGGTCTGGTT CTAAAGGCAT TCAAGACGAC
CCAGCTGGTA ACTACATCTA CTACGGTGTA CGTGAATTCG GTATGAGCGG TATCATGAAC
GGTGCTTCTC TACACGGTGG TTTCATCAAC TACGGCGCAA CTTTCATGAT GTTCATGGAA
TACGCGCGTA ACGCAGTACG TATGTCTGCA CTGATGGGCA TTCAGAACAT CTTCGTTTAT
ACCCATGACT CTATCGGTCA AGGTGAAGAT GGTCCTACTC ACCAGCCAGT TGAACAGCTT
GCAAACCTTC GTATGACACC AAACATGACA GTATGGCGTC CATGTGATGC GGCTGAAACT
GCTGTATCTT GGAAGAATGC AATTGAGCGC CGTAACGCGC CAACATCGCT AATCTTCAGC
CGTCAAAACC TACCTGCGCA AGCACGTACT GCCGAGCAGT TAGCTAACGT AGTTAAAGGT
GGTTATGTAC TAAGTGATTG CGCTGGCACG CCAGACCTAA TCCTTATTGC TACTGGCTCT
GAAGTTCAGC TAGCACTTGA TTCTGCTGCT GCGCTAACTG AGCAAGGTCA GAAGGTTCGC
GTAGTGTCTA TGCCATCGAC TAACGAGTTC GATAAGCAAG ACGCTGCTTA TAAAGAGTCG
GTACTACCAA GCTCAGTGAC TAAGCGTGTG GCGATTGAAG CGGCTCACGT TGATTTCTGG
CACAAGTATG TTGGCTTTGG CGGCGCAGTA GTGGGCATGT CTACCTTCGG TGAGTCAGCG
CCAGGCGGCG ACTTGCTGAA GCACTTTGGC TTCACAGTTG ACAACGTTGT AGCTACCGTT
AACGGGCTAT AA
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| Protein sequence | MSSRKELANA IRALTMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPN NPEWVDRDRF
ILSNGHGSML IYSLLHLTGY ALPIEELKNF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE KTLAAQFNQP GHDIVDHFTY CFLGDGCLME GISHEACSLA GTLGLGKLIA
FWDDNGISID GHVEGWFTDD TPKRFESYGW HVIANVDGHD SDAIRAAIEE AKSVTDKPTM
ICCKTTIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWN HGAFEIPENV YAGWDAKETG
AANEASWNDK FAAYEAAFPE LAAEYKRRVI TGDLPADFEE KAQAFVQECQ DKAEGIASRK
ASQNAIGAFG AILPEMLGGS ADLAGSNLTL WSGSKGIQDD PAGNYIYYGV REFGMSGIMN
GASLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMT VWRPCDAAET AVSWKNAIER RNAPTSLIFS RQNLPAQART AEQLANVVKG
GYVLSDCAGT PDLILIATGS EVQLALDSAA ALTEQGQKVR VVSMPSTNEF DKQDAAYKES
VLPSSVTKRV AIEAAHVDFW HKYVGFGGAV VGMSTFGESA PGGDLLKHFG FTVDNVVATV
NGL
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