| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0758 |
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| Symbol | |
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| ID | 5661157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 941881 |
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| End bp | 944400 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641235303 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001500620 |
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| Protein GI | 157960586 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTGATA TCACAATAAC GCAAGCTCAA CGGGGTGAAT GGCAGCAATC TATCGATATG
CTGGCACGAA TAGCCCAGTG CGGGGCCGCG TTATTACAGC TAAAGCAAAC CGATAAGTTT
GTTGCTATCG GCTACGCCAA TATTAGTCCT GAGCGACTAG ATAAGCTGCA ATTGACTCGA
GAGCAGGTCT ATCGCTGTAC TCCAACACAA ATGACTGATG ATAGTGATAC TCTCGCCGAA
GTCGACACTC GTATTCAATG TTTGATACCA ATCAACTGGC CAGCAGGCGC TCTATTCGGA
TATATCTGCA TCTGTCCTGC TGATGAGGAC ATTCCTGCTC ACTCTATGGC GGCTCAGCAA
GCAGAAATTA GACGGCTATT AAAAGTGTGC GCTGACAGCA TTGAACAGGA CTTAGCTCAA
ATTTATCGTC AATTTAAGCG CGATCAAAAC AGTAAGCGCG ATGTGAGCCA TCAGGCTAGT
CAACTTAGTT TACAAGCCTT CATTGATTGC ATGAAAGAGC ATGTGTGGGT CAAAGATACA
TCAGGCCGCT ACATGATGGT TAACCACAGT GTAGAGCTTG CTTGGAACCG CCCTAGAGAG
CAGATCTTAA ACTTTACCGA TGATGAGCTG TTTGAACCGC GCTTGGCTAA GCACTTTATT
GCCAGCGATA TCGAATCTAT TCGTCAGGGT GTTCAGGTCA GTGCTGGCGA GTGTGAAGGC
TTAGATATTG GTGATGTAGA CTCTTGGTTA GAAACGACTA AGGTACCAGC CATCAATGAT
GATGGGGAAC TCACTGGGGT GATTGGGATC TCGCGTAATA TCGCATCCCA TAAGGCGGCG
AAAGATCAGC TGGAGCTGGC TTCGAGAGTC TTCGAAAACT CGGTGGAGGG GGTGATCATT
ACCGATGTTG ACGGTGCGAT TATCGATGCT CATGGTGCCT ATAGCGAGAT CACTGGCTAT
ACAAAAGAAG AACTCTTAGG CCAAAACCCT AGAGTGCTTA ATTCTGGTCG CCATAAGAAG
GCCTTTTTTA CCGAGATGTG GAATGACTTG CTGAGCAAAG GCAAGTGGCA CGGTGAGATC
TGGAATCGCC GTAAAAGCGG CGCCATCTTT CCACAGATGC TTAATATCAG TGCTGTCTAC
GATATTGAGC ATCAGATCCG TTTTTTTGTC GCTGTGTTTA ATGATATTTC GGCGCAGAAA
CAGAGTGAAG CCGAACTGGC TAAGGTCGCG TTTCACGACC CGCTGACTAA GCTACCTAAT
CGTATGGCGC TTAATACTGG CTTAGAGCAA GAGTTAAAGC AGGCAAGCCA CAGCAATACG
CGTCTTGGAT TGGTTTATAT CGATGTCGAT CTGTTTAAGC AGATCAATGA AAGCTATGGC
CATCCTGTTG GTGATGAGGT TTTGCTTGAG GTCAGTCGTC GTTTTAGTCA GAGCTTAGGT
GATTTAGTCA CAGCCGCTCG ATTAGGCAGT GATGAGTTTG CGTTGCTGCT ACCCAATATC
GACAGTAACG ATGCCCTACT GCAGCAGATT AACAATTTAC GTAAGGTATT CGACCAGCCT
TTTATTTTAG GTGAACATGG TCAGGCTCGC CTTACCTCAA GCATGGGGGT GGCGATTTAC
CCTGATGATG CCCAAGATCC TAGTGGATTA TTAGTTAATG CAGAAATCGC GATGCATAGA
GCTAAGCAAG ATGGTCGTAA TAATTGCGCC TTCTATACCG AGTCTCTGAA TCAAGAGTCC
GTCGCTAAAC TCAAATTACA GAGTGCGCTT CATGACGCGA TAGAGCTAAA TGCCTTGTAT
CTGGTGTATC AACCCAAGAT CAGCTTTGTA ACTGGCGATG TGGTCGGTTT TGAGGCCTTG
CTACGTTGGG ACGATCCAGC TTTTGGTGCG GTTTCTCCAG CTGTCTTTAT TCCTCTGGCT
GAAAAAATCG GCCTAATTCA GGATATTGGC CGTTGGGTGT TAAAGCGCGC CTGTGAACAG
GGGCAACGTT GGCGTGAACA AGGCGTGAAC TTTGGCCGAA TCGCGGTGAA TGTTGCCGGT
CAGCAAATTC AACGCAGTAG TTTTGTCGAT GAAGTCGCAG AGACCCTTAA ACAAACGGGG
TTGCCTGCGA GCTGTTTAGA GCTGGAAGTG ACGGAGAGTT ACATGATGTC AGAGCCAGAG
CTTGTAAGCC AAGACTTAGC TAAGCTCGGA CTGATGGGAG TTGAGCTATC GATTGATGAC
TTTGGCACCG GCTACTCGTC ATTGAGTTAT CTTAAAAAAC TGCCGATCCA TAAGCTTAAA
ATCGATCAGT CATTCATTGC TGGCTTGCCT TTAGATACCC ACAATACCGC GATAGCCAAG
GCGATTATTG CCATGGGGCA TGCCTTGAAC CTAAAAGTGG TCGCCGAAGG GGTTGAAACA
CAAGCTCAGG CAGACTTCTT AAAGGATAAC TTGTGCGATC ATGCACAGGG CTACTTTTAT
AGTAAGCCGA AATTAGTCGA AGAACTGACA GACTTTTTGC ATAAGGCGCC GCGCAACTAA
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| Protein sequence | MIDITITQAQ RGEWQQSIDM LARIAQCGAA LLQLKQTDKF VAIGYANISP ERLDKLQLTR
EQVYRCTPTQ MTDDSDTLAE VDTRIQCLIP INWPAGALFG YICICPADED IPAHSMAAQQ
AEIRRLLKVC ADSIEQDLAQ IYRQFKRDQN SKRDVSHQAS QLSLQAFIDC MKEHVWVKDT
SGRYMMVNHS VELAWNRPRE QILNFTDDEL FEPRLAKHFI ASDIESIRQG VQVSAGECEG
LDIGDVDSWL ETTKVPAIND DGELTGVIGI SRNIASHKAA KDQLELASRV FENSVEGVII
TDVDGAIIDA HGAYSEITGY TKEELLGQNP RVLNSGRHKK AFFTEMWNDL LSKGKWHGEI
WNRRKSGAIF PQMLNISAVY DIEHQIRFFV AVFNDISAQK QSEAELAKVA FHDPLTKLPN
RMALNTGLEQ ELKQASHSNT RLGLVYIDVD LFKQINESYG HPVGDEVLLE VSRRFSQSLG
DLVTAARLGS DEFALLLPNI DSNDALLQQI NNLRKVFDQP FILGEHGQAR LTSSMGVAIY
PDDAQDPSGL LVNAEIAMHR AKQDGRNNCA FYTESLNQES VAKLKLQSAL HDAIELNALY
LVYQPKISFV TGDVVGFEAL LRWDDPAFGA VSPAVFIPLA EKIGLIQDIG RWVLKRACEQ
GQRWREQGVN FGRIAVNVAG QQIQRSSFVD EVAETLKQTG LPASCLELEV TESYMMSEPE
LVSQDLAKLG LMGVELSIDD FGTGYSSLSY LKKLPIHKLK IDQSFIAGLP LDTHNTAIAK
AIIAMGHALN LKVVAEGVET QAQADFLKDN LCDHAQGYFY SKPKLVEELT DFLHKAPRN
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