| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0757 |
|---|
| Symbol | lysS |
|---|
| ID | 5661156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 939729 |
|---|
| End bp | 941234 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641235302 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001500619 |
|---|
| Protein GI | 157960585 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.527071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC AAACCCAAGA CGAGAACAAG TTAATTGCAG AGCGTCGTGC TAAATTAGAG
CACATTCGTA CCAACTGCCC AGCAAACGGT CACCCGAACA ACTTCGATCG AAAACACAAA
GCGGCAGATA TCCAAGCTGA ATTTGGTCAC AACACCAAAG AAGAGCTTGA AGGCATGGGC
ATTGAGCGTT CAATCGCTGG CCGTGTTATG GCGAAGCGTG GTCCATTCTT GGTGATCCAA
GATGTGAGCG GTCGTATCCA AGCTTATGCG GGTAAAGACG TTCAAAAAGA TCTTAAAGAG
AAGTTCTTAG GTCTAGATAT TGGTGACATC ATAGGTGTGA CCGGTCAGCT ACACCTTTCA
GGTAAGGGCG ACCTATACGT GAACATGGAA GAGTACCAGT TGCTAACTAA GGCACTGCGT
CCACTTCCTG AAAAGTTTCA CGGTCTAACT GACCAAGAGA CTCGCTACCG TCAGCGTTAT
GTAGACTTGA TCGTTAACGA AGACTCTCGT GAAGCCTTTA TCATGCGTTC TAAAGTGGTT
TCGGCTATCC GTAACTTCAT GGTGAAGAAA GAGTTCATGG AAGTTGAAAC ACCTATGATG
CACAGCATTC CAGGTGGTGC TTCAGCACGT CCATTCGAGA CGCATCATAA TGCTCTTGAT
ATCGCTATGT ACCTACGTAT TGCACCTGAG CTATACCTTA AGCGTCTAGT GGTTGGTGGT
TTTGAGCGCG TATTCGAAAT CAACCGTAAC TTCCGTAACG AAGGTCTGTC TCCTCGCCAT
AACCCTGAAT TCACTATGAT GGAATTCTAT ATGGCGTACG CTGACTTCAA CGATCTAATG
GATCTGACTG AAGAGATGCT AAGCTCTATC GCAACTGAGC TATGTGGTTC TCCACAGCTT
CCATACGGTG AGCACACTGT TGATTTTGGT GGCCCATATG CACGTTTGAG CATGTTGGAT
GCAATCAAGA AGTACAACCC AGACAACGCA ACAATCCAGT CTATGACTTA TGAAGAAGTT
AAAGACGTTG AGTTTATGCG TGACTTGGCT AAGAGCCTAG GCATGACAGT TGAGAAGTTC
TGGACTTGTG GCCAGCTACT AGAAGAGATC TTTGGTGAAA CAGCTGAAAC TCAGTTGATG
CAACCTACCT TCATCACTGG CTACCCAGCG GATATCTCTC CACTAGCACG TCGTAACGAC
GACAACCATT TCATCACAGA CCGTTTCGAG TTCTTCATCG GCGGCCGTGA AGTGGCTAAC
GGTTTCTCTG AGCTTAACGA TGCTGAAGAT CAAGACAGCC GTTTCAAGGC TCAGGTTGAT
GCTAAAGATG CTGGTGATGA CGAAGCGATG TTCTATGACG CTGACTACAT CACTGCACTA
GAGCACGGCT TACCACCAAC TGCGGGTCAA GGTATCGGTA TCGACCGTCT AGTGATGCTA
TTCACTAACA CGCACACTAT CCGTGACGTG ATCCTATTCC CTGCGATGCG TCCACAAGCT
AACTAA
|
|---|
| Protein sequence | MTEQTQDENK LIAERRAKLE HIRTNCPANG HPNNFDRKHK AADIQAEFGH NTKEELEGMG
IERSIAGRVM AKRGPFLVIQ DVSGRIQAYA GKDVQKDLKE KFLGLDIGDI IGVTGQLHLS
GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEDSR EAFIMRSKVV
SAIRNFMVKK EFMEVETPMM HSIPGGASAR PFETHHNALD IAMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADFNDLM DLTEEMLSSI ATELCGSPQL
PYGEHTVDFG GPYARLSMLD AIKKYNPDNA TIQSMTYEEV KDVEFMRDLA KSLGMTVEKF
WTCGQLLEEI FGETAETQLM QPTFITGYPA DISPLARRND DNHFITDRFE FFIGGREVAN
GFSELNDAED QDSRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQA N
|
|---|
| |