| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0704 |
|---|
| Symbol | |
|---|
| ID | 5661103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 864225 |
|---|
| End bp | 866834 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641235249 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_001500566 |
|---|
| Protein GI | 157960532 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTCATC TTTATTCATG CTCCCTTGAG CGCTCATTGG ACGTAATTAA CGGCCCAAAG
TCCTCGGTAC ATGACATATT CGATATAAGA GTAAAAGACC CACTCGTGAC ATCTCTACCT
ATACATGCAC TGCTACAACC ACTGCGTGAC GCATTTTCTT GTTGCCAGCA GGTGATCCTT
GAGGCGCCAA CTGGCGCGGG TAAGTCAACC GCTCTGCCGC TGGATATGCT TAACTGGCCA
GAGATTAGCG GTAAAATATT GATGCTGGAG CCTAGGCGAG TGGCTGCGCG TAATGTGGCG
CAATTTATTG CCAAGCAGCG AGGTTGTGAG CTGGGTACTG AGGTGGGTTA CCGCGTCAAA
GGTGACACCC GAGTCTCGGC CAATACTCGC TTAGAGATTG TCACCGAAGG GGTATTAACC
CGAATGATCC AGCAAGACCC TGAGTTGACT GGGGTCGATA TGGTGATCTT CGATGAAATC
CATGAGCGTC ACCTCACCAC AGATCTCGGT CTGGCTCTCG CGCTAGAGAT CCAAGCAAGC
TTTCGCGAGG ATTTAAAGAT CCTCGCCATG TCTGCGACTC TGTCAGGTTT ACCTCTGGCT
GAGCTAATGC CTGACGCTAA ACAGCTCAAA AGTGAAGGCC GCAGTTTTCC TGTTGAACAC
GCTTATAGTG GCGTTCCTAA TCAGAGTCAT TGGATTGAGC ATATGGCTAA GGTGATAGTG
GCCAGTCTAC AGGAGCATAG CCAAGGCTCC TTGCTAGCCT TTTTGCCGGG ACAGGGAGAG
ATTAATAAAC TCCACGGCAT ACTGAGCTCA CGCCTAGATT CAAATGTTTA TGTCATCTGC
CCACTGTATG GCAGCCTGAG TGCTAGGGCG CAAGATCTTG CGATAGCGCC TGCAGCAAAC
GGAATACGCA AGGTGGTGCT CGCGACTAAC GTGGCCGAGT CGAGCTTAAC CATAGATGGC
ATCACCCAAG TGATCGATTC TGGCTATAAG CGTCAGGCCA GATTCAATCC TAAAACCGGT
GTCACCCGTT TATCGCTGAA GCGAATCAGT CAGGCATCGG CGGCGCAGCG CGCGGGTCGT
GCGGGCCGCT TGATGGCCGG ATTTTGTACT CGGCTGTGGA GCCAAGAAGA GCATGGCCGC
TTACTCAAGG CCGATGAGCC AGAGATTGTC CACAGCGATC TGTTGTCTAT GGTGCTAGAC
GCTGCCTATT GGGGCGTTAA ATCACTTAAT GAGCTGCCCA TGCTCACCCA GCCATCAGCA
GCAAATGAAG ATGTAAGTTG GCGCTTACTT CAAACTATGG CCATGGTGAA TGAGTCACGC
TCTATTACTC AACATGGCAG GCAGGCACAC AAGCTGGGTT GCAACCCAAG ACTTGCACAT
ATGTTATTAA TGGCGAAACA AAGTGCAGAG GATAACCAAG ATCTAAACTT GGGGCTGCTA
GCCTGTATCT TAGCGGGAAC GCTTGAGGCA CGTAGCCGAA GTCGTCAAGG AGCTGATATC
AGTCGCTACC TACTTGAGGC CCTGCAGGGC GAGTCGAGTA AGCAGATCCG TAACTGGGTC
AAGACCTTAG GGTTATCGGC TCTGGGTCAG CTAGATTTAG CTCAAGTCGC ACGTAATGCT
AGCAGTGATG ATATTGCCAT GTTACTGGCG CTGGCTTACC CAGATAGAAT TGCCAAGGCG
CGAGGCGTGA CAGGTTACCA ATTGGCAAAC GGTAGCGGCG TGGAACTGGC CAATGAGGAT
GCATTATCCG GTTCGCCTTG GTTAGTGGTT GCAGACCTGC AAGAAACAGA GGGGCGTAGC
CAAGCTAAGG TATATCTAGC TGCGCAGCTT AATCCACAGT TGTTTGACTC TGAGCTGGCG
TCTTTGGTGC TCACCCAAGA GTATGGTGGC TGGGATGAGG TAAAGGGGCG TTTCTTTGCC
GAGAAGCAGC AAAAGATTGG CGAAATTTTA TTAACTAAGA CACCAATTCA CAATGTTGAT
AAACGTCTTA TCAAGCAGGC AATCCTAGAA CAAATTAGGC TAAAAGGCTT GGCATTAATG
AACTTTAATG AGGCTTGTCA GCAGCTGCAG CAGCGAGTGG CATTAGCCAG ACAATATTGT
CCAGAGCATG GCTGGCCAGC ACTCGATAGT GACACTCTGT TAAATGAGCT TGATAGCTGG
CTGGCGCCTT ATTTAGATGA GGTGCGCAGT CTTGCACAAT TGCAGCAATT AGATTGTTAT
ACTCTGCTGC TTAATCTTTT GCCTTGGGAG TTGCAGCAGC AACTAGAAGG GTTACTTCCA
AGAAAGTGGC CGATGGCCAC AGGTTCTAGC GTTAAAATCG AGTATGATGC CACAGGTCGA
GCGCTACTGA GTGTGAGGCT ACAAGAGGCG TTAGGTATGC AGCAGAGTCC AAGGCTTGCT
CAAGGCAAGT TGGTGGTCAC TATGGAGCTA TTGTCTCCGG CCCATAGGCC GCTGGCGTTA
ACAGCCGATC TTGAAAGCTT TTGGCAAGGG CCCTATGAGC ATGTGAAGAA AGAGATGAAA
GGGCGTTACC CAAGGCATTT ATGGCCAGAT GATCCAGCCA ACACTCAACC GACCAAATTC
ACTAAAAAGA AGACGTTTAG CTCGCAATAA
|
|---|
| Protein sequence | MIHLYSCSLE RSLDVINGPK SSVHDIFDIR VKDPLVTSLP IHALLQPLRD AFSCCQQVIL
EAPTGAGKST ALPLDMLNWP EISGKILMLE PRRVAARNVA QFIAKQRGCE LGTEVGYRVK
GDTRVSANTR LEIVTEGVLT RMIQQDPELT GVDMVIFDEI HERHLTTDLG LALALEIQAS
FREDLKILAM SATLSGLPLA ELMPDAKQLK SEGRSFPVEH AYSGVPNQSH WIEHMAKVIV
ASLQEHSQGS LLAFLPGQGE INKLHGILSS RLDSNVYVIC PLYGSLSARA QDLAIAPAAN
GIRKVVLATN VAESSLTIDG ITQVIDSGYK RQARFNPKTG VTRLSLKRIS QASAAQRAGR
AGRLMAGFCT RLWSQEEHGR LLKADEPEIV HSDLLSMVLD AAYWGVKSLN ELPMLTQPSA
ANEDVSWRLL QTMAMVNESR SITQHGRQAH KLGCNPRLAH MLLMAKQSAE DNQDLNLGLL
ACILAGTLEA RSRSRQGADI SRYLLEALQG ESSKQIRNWV KTLGLSALGQ LDLAQVARNA
SSDDIAMLLA LAYPDRIAKA RGVTGYQLAN GSGVELANED ALSGSPWLVV ADLQETEGRS
QAKVYLAAQL NPQLFDSELA SLVLTQEYGG WDEVKGRFFA EKQQKIGEIL LTKTPIHNVD
KRLIKQAILE QIRLKGLALM NFNEACQQLQ QRVALARQYC PEHGWPALDS DTLLNELDSW
LAPYLDEVRS LAQLQQLDCY TLLLNLLPWE LQQQLEGLLP RKWPMATGSS VKIEYDATGR
ALLSVRLQEA LGMQQSPRLA QGKLVVTMEL LSPAHRPLAL TADLESFWQG PYEHVKKEMK
GRYPRHLWPD DPANTQPTKF TKKKTFSSQ
|
|---|
| |