Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0701 |
Symbol | |
ID | 5661100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 861751 |
End bp | 862677 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641235246 |
Product | transcriptional regulator, CadC |
Protein accession | YP_001500563 |
Protein GI | 157960529 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCTAA GTTTTAGTGA ATTCTCCATA GATAGTGAAA CATTAGAACT GAACGTAGAT GGGCATTGTC TCGCTATCGA TGAGCGAAAT ATGACTCTGT TGGCCATGTT GGCAGAGCGC TACCCAGATT ATTGTACTAA GCAGGAGTGC TTAGCGCTCA TCTGGCAGGA GACCATCGTC TCAGATATGT CATTATCTAA GTTGGTGTCA GATACCCGTA AACTTTTCTG TAAGGCGGGT TATCAGGGGC CCCTTATCCA GACCGTTCAT GGTCGCGGCT ACCGTCTAGA GCATCAACTT GGTAAACAGC TTCTTGCCCA AGCGGATAAA AATGATGATG TTATTGAACC GATAAAGATG CAAGCACCTG AACAAGTCAT TGATAGTTGC CAAGACAAGA AAGCACCCCA ACAACTCGTT AGTCAGCCTT CAGGTTGGGA GCTCCTAGCT AAGGCATTAA TCGCATTGCT GCTGATATTA GGGCTTTTTT TTCAGTTCTG GCAGGGGGGA GTCTCAAGTT CAGATCCTAT GAGGCAATTG GCCTACAGTG AACCTCATAA TGCCGTCGGT CGCGTATTGT GGGTCGATGA TCACCCCGAA AATAATTTAG TCGAAAAAGC CTATTTAGAG CAGAAGAACA TAGGTGTCTA TAACACGGTA ACCTCGGAAG AGGCCTTGAT GTTGCTCTCC ATGTATCACT ATCAAGCCGT GATCTCCGAT ATGGGGCGCC ATGGAGATTC ATTGGCAGGG CTGAAGTTAT TACAGGCAAT TCGGGCTAAG GGGAATAAGA CGCCGTTTTA CCTCTATACC TATGTGGAGT CACCGGGGCT CGTAGATGCC GTTTATGAGA GCGGTGGTCA AGCCGTTGTG ATCGACTCTG AGTCTCTTTA TCAATTACTG CTAAGCCATT TTGAAGCCGA AAATTAG
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Protein sequence | MLLSFSEFSI DSETLELNVD GHCLAIDERN MTLLAMLAER YPDYCTKQEC LALIWQETIV SDMSLSKLVS DTRKLFCKAG YQGPLIQTVH GRGYRLEHQL GKQLLAQADK NDDVIEPIKM QAPEQVIDSC QDKKAPQQLV SQPSGWELLA KALIALLLIL GLFFQFWQGG VSSSDPMRQL AYSEPHNAVG RVLWVDDHPE NNLVEKAYLE QKNIGVYNTV TSEEALMLLS MYHYQAVISD MGRHGDSLAG LKLLQAIRAK GNKTPFYLYT YVESPGLVDA VYESGGQAVV IDSESLYQLL LSHFEAEN
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