| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0679 |
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| Symbol | |
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| ID | 5661078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 839735 |
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| End bp | 841789 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641235224 |
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| Product | TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase |
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| Protein accession | YP_001500541 |
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| Protein GI | 157960507 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATTGT TTTTTCCGGC TCTACTCGGC TATTACCGTC TTTGCTTTTC CTTGCAACTA
GCACCTTCTC TTAAACCTAG CACCTTCTGT AAAATCCCCT CTGTAAATCT GGTAATTCAA
TGTGTTAAGC TTGTTGGCGT TGATTGTAAA CAAACTGGAT TCCGGGTGTA CATTGCAAAA
AAATGGCTAA AGATCATTAC GCTCTTTATG GTGGCAAGTT CTGCCTCCGT TATGAGTCTT
CAGGTGCACG CAGCCAGCCC CTTTCTTAAG TTAGAGCAAC AGCTTTCTGA CTCATCTCCA
AGTGATGCCC TGACACTGCT CAACGAGTTT CAACTCGAGC CTATTAGCAC CACGGCATAC
AACAGGGCTA AGTTACATTT TCTCTACGGC AAGCAATACG CACGTAACCG CCTGCTTGAG
CAATCGATTG CAAGCTACGA CATGGCAATA GTGCTGGCTA AGCCACTCAT GGGCTCAGAA
TTGCTAATTG AGAGCTATCT AGGGCGTTCT TTTGCACGCT ATTTACAGAC GAACGATCCT
GAAGTTTATT GTAGCGACAG GGCAAAGGCG TTGGTGCTAG CTAGGCGGCA AAGCAACAGA
GAGTTATTAG CTAAGAGCTT AACTCAGAAT GCTTTTTGCT TTAATAAGGT CACGAATGTG
CATCATGGCA TCGCTCTGCT AGATGAAGCC ATGTTGTTAA TCGATACTGA AGACAAAGCG
AATTATAACC GTAAGGCAAT GATCTTTAAT GCCACCGGTT CACTCTATCG TACGGTAGGT
CTACATAAAC GTGGTTATGT GAACTTTGAG AAAGCCTATC AAAATTGGAG CGAGATAGAC
GATACCCAAG ACATGTTTAA TATGCTGCAT AACATGATCA GCGAAGCGGT TAAGCTGGGA
GATTGGGAAA AGGCGCGAGA TAATATTGAA CAGCAGTTTT TACTGGCGGT TAAAGCTTCT
GAATTTAACG ACTTTGGTTT TTTCGCTCAC CTAAATGCGG GGCGCGTAGA ATTAGCCACC
CATAATTATG TCGATGCGAT TGAGCACTTA GAGCAAGCCA TCTCCCTCAA GGACACCACC
CGAGAACAAT ATTTTATCAC GAGTAGTTAC CTGTTTCTGG CCCAGGCATA TTTACGAAGT
GGTGATGTAG AGCAAGCGGC GGCCATGGCA CGCATTTTTA AGCAAGACAG CACATTCCCT
AAGAATATGA GCAGTATGAC GCTCAAGGCT GATGCCATTA TAGCCTTGGA GCAGCAGCAG
TATTTATCTG CGATAAACGC CTTGCTAGAG GTGATTGATA AGGAACGGCA AAAGAATAAA
CAGATCATAG ATAATGAGGT GATCGACTTG GCGTTAGAGC ATAACTCTAC ACTCGCCGAA
TTTGAGAATC AGTTACTGGC GAACAAATTG GCCATTAACG AATTGAGCCT AGCGGCCGTG
GCAGATAAAC AGCGGATCTA TGACTTAAGG GTGAGCCTCT TCTTCTTGGT AGCTACGGTA
CTTCTGATTG CAATTTTGTT TCTGTGGCAA TCTCGTAAAG CCTTTAAACA CAGTGCACAA
ACTGACTTCT TAACTGGTAT CGCTAATCGC GCTCATGTGT TCAACCGAGG CCAGAGAATG
ATCGACAGGG CTATCAAGAA GAAGCATCCC TTAGCGGTGA TCATTTTTGA TATCGATAAC
TTTAAGTCTA TTAACGATCA GTATGGCCAT CAGGTGGGCG ATCTGGCGAT AAAAGCTGTT
GCCAAGCGCG GAGAGCGTTG GCTCAGAGAT TGCGATCTTA TTGGCCGAAT CGGCGGCGAA
GAATTTTTAA TTGTACTGCC AGATGTCACT GAGGCTGACG CGATTCTTAT CTCTGAACGT
TTACGTGAAG GCATAGCCTC TCAGGCATTT AAGTTCGATG ATGTGGTTAT CGAACTGACG
GTAAGTATAG GTGTGGCTGC ATTAAAACCG CCTCAAACTC GCTTAACCGA TCTGGTTAAT
CTGGCAGATA AGGGACTCTA TAAGGCCAAG TTCTCTGGTA AGAATAGAGT CTATCTTATT
GAACAGTTTG CTTAA
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| Protein sequence | MILFFPALLG YYRLCFSLQL APSLKPSTFC KIPSVNLVIQ CVKLVGVDCK QTGFRVYIAK
KWLKIITLFM VASSASVMSL QVHAASPFLK LEQQLSDSSP SDALTLLNEF QLEPISTTAY
NRAKLHFLYG KQYARNRLLE QSIASYDMAI VLAKPLMGSE LLIESYLGRS FARYLQTNDP
EVYCSDRAKA LVLARRQSNR ELLAKSLTQN AFCFNKVTNV HHGIALLDEA MLLIDTEDKA
NYNRKAMIFN ATGSLYRTVG LHKRGYVNFE KAYQNWSEID DTQDMFNMLH NMISEAVKLG
DWEKARDNIE QQFLLAVKAS EFNDFGFFAH LNAGRVELAT HNYVDAIEHL EQAISLKDTT
REQYFITSSY LFLAQAYLRS GDVEQAAAMA RIFKQDSTFP KNMSSMTLKA DAIIALEQQQ
YLSAINALLE VIDKERQKNK QIIDNEVIDL ALEHNSTLAE FENQLLANKL AINELSLAAV
ADKQRIYDLR VSLFFLVATV LLIAILFLWQ SRKAFKHSAQ TDFLTGIANR AHVFNRGQRM
IDRAIKKKHP LAVIIFDIDN FKSINDQYGH QVGDLAIKAV AKRGERWLRD CDLIGRIGGE
EFLIVLPDVT EADAILISER LREGIASQAF KFDDVVIELT VSIGVAALKP PQTRLTDLVN
LADKGLYKAK FSGKNRVYLI EQFA
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