| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0675 |
|---|
| Symbol | |
|---|
| ID | 5661074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 835795 |
|---|
| End bp | 836511 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641235220 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001500537 |
|---|
| Protein GI | 157960503 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTCG CAAAATACCT TGCCTTAACC GGCTGCTGTT CACGTCGCGC CGCGACCCGC
TTAATCAGAG ACGGCTTAGT TCGTATCGAT GAGCGCCTCG CTAACCACGT CGATAGCGTC
ACCCTAATCG ACACGCCAAT AGGTCAGCGC AGCATCGAGC AGATCTATGT TAACGATGAA
CCGATTCGTG TCGTCGAAGC CAAAGCCTAC TGGCTATTTA ATAAAGCCGT CGGCACAGAT
AGTCGTCTGC TAGCGCACCT GCCAAACAGC TTATTACACC TGTTGCCGGA GTCTCCACGG
CTCTACCCTG TCGGTCGTCT CGATAAAGAC AGCCGCGGCT TACTGATCTT AACCAACGAT
GGCGAATTAA CTCATAAGCT AATGCACCCT GATTTTGGTC ATGCTAAGAC TTACCATGTG
CAAGTTGACC GCCCTTTCGA TGATGCTTTT CTTGTAAACA TGGCCGCTGG GGTGAGTTAT
AAAGATGTCG TCACTTTACC TTGTATCATG CAGCGTTTAG CTGCTGATAA ATATGAGATT
ACTTTGACTC AGGGGCTAAA TCGTCAGATA CGCCGCATGT CACAGGCGTT GGGGTTTAAG
GTTATCGACC TTAAACGGGT ATCGATTCAG AGTTTACAGT TAGGGGATTT GCCTGAAGGG
TCTATGCGAC CTCTGAGTTC AGCTGAATTG GCTGACTTGT TGGATTCTGT TGCTTAG
|
|---|
| Protein sequence | MRLAKYLALT GCCSRRAATR LIRDGLVRID ERLANHVDSV TLIDTPIGQR SIEQIYVNDE
PIRVVEAKAY WLFNKAVGTD SRLLAHLPNS LLHLLPESPR LYPVGRLDKD SRGLLILTND
GELTHKLMHP DFGHAKTYHV QVDRPFDDAF LVNMAAGVSY KDVVTLPCIM QRLAADKYEI
TLTQGLNRQI RRMSQALGFK VIDLKRVSIQ SLQLGDLPEG SMRPLSSAEL ADLLDSVA
|
|---|
| |