Gene Spea_0600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0600 
Symbol 
ID5661000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp738034 
End bp738765 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content48% 
IMG OID641235146 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001500463 
Protein GI157960429 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.604988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGTGC CAAGAATCTA TCAACAATCA ACATTAGTTG TCGGCCAATC GGTCGCATTA 
GATGATGAAG CGGCAGGTCA TGTTGGCCGC GTATTAAGAA TGTCTTCAGG TGAGCAGGTT
AGCTTGTTCA ATGGTGACGG CAATGACTAT CTTGCTGAGA TTATTAGCGC TAGTAAGAAA
AACGTCGAAG TTAAGGTCCT CTCATGCGAG GCAAATGATA GCGAATCGCC ACTTAACTTA
CATTTAGGCC AAGTGATCTC TCGTGGCGAT AGAATGGATT TCACCATTCA AAAGTCGGTT
GAGCTGGGCG TGAACACCAT CACGCCACTG TTTTCAGAGC GCTGTGGGGT CAAATTAACT
GGCGAGCGTT TAGATAAAAA AATTCAACAA TGGCAAAAGA TTGTCATTAG CGCCTGCGAG
CAATCTGGCC GTAGTGTGGT GCCGGTTATC CGCCCTGCGA TGCAACTTAG CGATTGGTGT
GCTGAAGATT CTGACGCGGT GAAATTGAAC CTGCATCCGC GAGCCTCACA CGGTGTTAAC
GGGCTGACAC TGCCTAATAA CCGTGTCAGA TTGGTTATTG GGCCAGAAGG TGGTTTATCA
GCGCCAGAAA TCGCCATGAC CGAAGAGCAC CAATTTACCG ACGTACTGCT TGGCCCACGA
GTACTGCGCA CAGAAACCGC AGCGCTCACC ACCATTAGCG CTTTGCAGCT AAAATTTGGT
GATATCGGCT AA
 
Protein sequence
MRVPRIYQQS TLVVGQSVAL DDEAAGHVGR VLRMSSGEQV SLFNGDGNDY LAEIISASKK 
NVEVKVLSCE ANDSESPLNL HLGQVISRGD RMDFTIQKSV ELGVNTITPL FSERCGVKLT
GERLDKKIQQ WQKIVISACE QSGRSVVPVI RPAMQLSDWC AEDSDAVKLN LHPRASHGVN
GLTLPNNRVR LVIGPEGGLS APEIAMTEEH QFTDVLLGPR VLRTETAALT TISALQLKFG
DIG