| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0590 |
|---|
| Symbol | |
|---|
| ID | 5660990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 724469 |
|---|
| End bp | 725533 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641235135 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001500453 |
|---|
| Protein GI | 157960419 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0124003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CTGTTCTGTC TGCCACTATT ATTTCAGCAC TAGCCGCCAC TTCTTTTACA
GCACTAGCTG ATGGCCCAAG TTTCTACGGC CGTGCCGATC TTGCAATCAC TAACTCTGAT
ATGGGTATCG CTACTCAAAA TCAAAAGTCA GGCACCATCA TTGAGAATAA CTTCTCATGG
TTAGGTGTAA AAGGTACTGA AGCGATCAAT AGCGATCTTG AAGTTGTTTA TCAAATGGAG
TTTGGCGTAA GCAACTTCGA TAACTCTAAT AACACTTTCG CTGCTCGTAA CACTTTCCTA
GGTCTTAAGT CAGCAACAGC TGGTACCATC CTAGTGGGTC GTAACGACAC TGTATTTAAA
GCTTCTGAAG GTGGCTTCGA CATTTTCGGT AACACTAACT CAGATATCGA CCTATTAGCT
GCCGGTCAGT CTCGTAGCGC CGATGGCTTC AGCTACTACT CACCAAAGAT TGCCGACCTA
GTAACATTAA ATGCCACTTA TTTGATGGAT GACAACTACG ATCAAGTAAA TGCTTCAGGT
GAAGAAGTTT ACACTGACAA CATGTACGCA CTAAGCGCAA CTGTTGGTGA CAAAGGCCTT
AAAGCTCAGA ATTACTACGT TTCTGCAGCA TACAATGATG GCATCGACAA CGTGAAAGCT
TACCGCGGCG TGGCTCAAGT TAAACTTGGT CAAGTGATCT TAGGCGGTTT CTACCAGAAC
AGTGAGCACG TTGACAGCAA GTACTCGAAC CTAGAAGGCG ACACTTACTT TGTAAACGCA
GCTTACGTTA TGGGTGACCT AAAGCTTAAA GCTATGTACG GTAGCGATGA CTCTGGTTTA
GGTAAGTACG TTAGCCGTTA CGTAGGTGAC ACTAATGGTG CAACACTAGA AACTGTTAGC
GATGTAGATC TACAACAGTT CAGCGTTGGT GCTGACTACC GCCTAAGCAA GAACACCCTA
GTTTACGGTC ACTACACTAA GTACGATGGC GACATGAAAC TAAGCGGTTT TACCCATGAC
CTAAGTGACG ATATCTTCAC TGTCGGTATG CGCTTCGATT TCTAA
|
|---|
| Protein sequence | MKKTVLSATI ISALAATSFT ALADGPSFYG RADLAITNSD MGIATQNQKS GTIIENNFSW
LGVKGTEAIN SDLEVVYQME FGVSNFDNSN NTFAARNTFL GLKSATAGTI LVGRNDTVFK
ASEGGFDIFG NTNSDIDLLA AGQSRSADGF SYYSPKIADL VTLNATYLMD DNYDQVNASG
EEVYTDNMYA LSATVGDKGL KAQNYYVSAA YNDGIDNVKA YRGVAQVKLG QVILGGFYQN
SEHVDSKYSN LEGDTYFVNA AYVMGDLKLK AMYGSDDSGL GKYVSRYVGD TNGATLETVS
DVDLQQFSVG ADYRLSKNTL VYGHYTKYDG DMKLSGFTHD LSDDIFTVGM RFDF
|
|---|
| |