| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0580 |
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| Symbol | |
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| ID | 5660980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 709947 |
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| End bp | 713180 |
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| Gene Length | 3234 bp |
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| Protein Length | 1077 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641235125 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001500443 |
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| Protein GI | 157960409 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAGTC ATGCCCTGAT GAATACCCGA CAATTAACCA GCAAAAATGT AACCTCCTGC
CGCCTTATCG CCAGTGTAGT TGCCCTTTTA GTCTGCCCTC TGAGCTTTGC TAGTGATGCG
CCTCTAAGAT GGCAGAACCA CCAAATCTTC GAGCAGAACA AGCAGCCACC CCATGCGAGC
TTCTTTGGCT ATTCCAGCCA AGAAAAAGCC CTCACTGATG AGTATAGAGA CAGTGAAAAC
TTCTTCGATC TTAACGGTCG CTGGCAGTTT CATTATGCGA ACAATCCATC GAGCGCCCCA
AAGGATTTTG CGCAAGTAGA GGCCAACCTT GCTGACTGGC AGAGCATTCA AGTTCCCGGC
AATTGGGAAA CACAAGGTTT TGGCCACGCC ATCTATTTAG ATGAGCGCTA CCCATTTAGC
ACCACCTGGC CCGATGCCCC TGAAGATCAC AACCCGACGG GTAGTTACCG CCGTGAGATA
AATCTGCCGC AGAGTTGGCA AGACAAGCAG GTATTTCTGC ACATTGGCGC CGCACGCTCG
GCGCTGACCG CCTTCGTTAA TGGCCAGGAG GTCGGTTATA GTCAGGGCGC TAAGACCCCT
GCAGAATTTG ATATTACCCC TTATCTAAAT CAAGAACAGA ATCTACTGGC CTTACAGATT
ATTCGCTGGA GTGATGCCAG TTATTTAGAA AGCCAAGACA TGCTTAGGGT CAGTGGCATC
GAGCGCGATG TCTATCTGTA TGCTACTGAG AAACAGCGTA TTAGCGATAT CGACGCCCAA
TATCAGATGT CGGCAAACTT AGATAAGGCT GAAGTTGCAC TTAAACTGAA GTTAGAAAAC
CATGCCAAAG CTAAAGATGT GAGCCTTAGC TATCGACTGC TATCGCCTCA AGGTGTAGAG
GTTAGCCGCG GTGAACAGAA AATAGCTAAA CTGGCAAAGC AAGATACACG GCAGTTCGAT
TTTCCTCTCA ATTCTCCTAT GCTTTGGAGC GCAGAAACTC CCAACCTCTA TCAACTAATT
GTCAGCCTTA ACGATAACCA AGGTGAATTG CTACAAGCCA GTAGCCAACA TTTGGGCTTT
CGCCGAGTCG AGATTAACAA TGGTCAACTA CTGGTCAATA ACAAGGCGAT CACCATTCGT
GGCGTCGACA GGCACGAAAC CGATCCCGAT ACAGGCCACG TTGTCAGTCG AGCCAGTATG
GAAACTGATA TCCGCCTGAT GAAGCAGAAC AATATCAATG CGGTGCGCTC GAGCCATTAT
CCCAATGATC CTTACTGGCT GAGCCTCACC GATAAGTATG GTCTGTATGT AATTGATGAA
GCCAATATCG AATCACATCC GCTAGCTATC GATAAAAATA CCCAGCTTGG TAATGAGATG
AGCTGGTTGC CAGCCCATCA AGCGCGAGTC GAACGTATGG TCGAGCGCGA TAAGAATCAC
CCCTCTATCA TCATCTGGTC TCTGGGCAAC GAAGCCGGAG AAGGTAAACT CTTTGCCGCG
CTCTATGATT GGATTAAGCA GCGCGACCCG AGTCGCCCTG TACAGTATGA GCCTGCCGGT
CAACATGCTT ATACCGATAT CGTCGCCCCT ATGTATCCGT CCATTGAGCG CATCGAAAAG
TACGCCAAAG AGCATCAGGA TAGGCCACTT ATTATGATTG AGTACGCCCA TGCCATGGGC
AACTCGGTCG GTAATCTGCA AGATTACTGG GATGTCATCG AACAATACCC TCAGCTTCAA
GGCGGCTTTA TTTGGGACTG GGTCGACCAA TCCCTCGCCT TTACCAATGA AAATGGTCAG
CGCTATTGGG CCTACGGTAA AGACTATCAT CCTGATATGC CTACCGATGG TAACTTTCTA
AATAATGGTT TAGTGGATCC CGATAGAAAC CCGCACCCAC ATCTATCTGA GGTGAAGAAG
GTTTATCAGC CGCTCAAGCT AACTGAACTA ACCCGAAACC AGCAAGATGT GACGTTTACC
TTAAGCAACC GCTATGACTT TATCGACACC TTAGGGCTAA ACCTAATATG GACATTGCAA
CAAGACGGAC GTCCGGTTGC CGAAGGCTTG GTCGCGATGC CACAAGTAAA GGCGGATACA
AGCCAAGTGC TCAACTTTAC CTTGCCTGAG TCTGCGATTA AGACTATGCA GCAAAGCCCG
CAATATGAGT ATCAACTGCT ATTAGAGGTC AAGGTCGATA CCCCTCAGCC TATGTTACCA
AGCGATCACC TAATAGCCTT CGAGCAATTC GCCCTGCAAT CAGCTAAGCC TGTAACGGCA
AAGACCATCG ATGCGATAAA GGAGACCCGT GATAGCTGGA TATTAGGGAA AAATAACGCC
CAGTATCTGT TCAACAAAGA CACAGGCTGG TTAACTGACA TTCGAGTCGA AGGAGAGTCT
CAACTCAAGA GCCCGTTAAT AGCCAACTTT TGGCGCGCCC CTACCGATAA CGACTTAGGT
AACCAGATGC CTAAGTGGGC AGGTATGTGG CAAGACGCAG GGCAAGAACT TGAACTCGTC
TCCATCACTC GCAGCAAAGG CCAGCATGCG GCGCTTAAGG TTACCCACCA GCACCCTAAG
CTTGGCTTTA CGCTTACCTC CTCTTATCGA GTGAGCGATC AGGCCAAACT GTTAGTCAGC
AGTGACTTTA CCCCTGGAGA TGGTGAACTT GCCGATCTTC CCCGCTTCGG TTTTTCTGCA
AGGCTCCCTT TCGAGGTGCG CTTTATGCAC TACTTTGGCC GCGGCCCCGA AGAGACCTAT
ACCGATAGAA AAACCGGCAA TCCTGTTGCC TGGTATGCCC TGCCGATAGA GCAAACCTTC
CATCGCTATT CACGCCCGCA GGAAACTGGG CAACGCACCG ATGTACGCTA TGTCGCCGTA
ACCAATAACA AGGGAGCAGG CCTACTTGCG CAAACCACCA TGAACAGTGA AATGCTGCAA
ACGAGTCTGT GGCCATTTGC TCAAGCAGAT ATCGACTTTA GGGACGGCGA TGCCGAAGGT
TCAGCATCAG GGCTAGTACC AGTGACAGCG AACCATGGCG CCGAGATCCC AATCCGAGAT
TTTGTCACCT GGAATATCGA TTACAAACAG ATGGGCGTCG GCGGTGATAC CTCATGGGGG
CGTCCTGTAC ACGCACCCTA TCGTATCGCA CCAAAAGCGA TGAGCTTCAG CTTTAGCCTA
GAGCCCATTT CAGCTAACAC AGATATAAAA AAGCAGGCTA GAGGCCTGCA ATAG
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| Protein sequence | MKSHALMNTR QLTSKNVTSC RLIASVVALL VCPLSFASDA PLRWQNHQIF EQNKQPPHAS
FFGYSSQEKA LTDEYRDSEN FFDLNGRWQF HYANNPSSAP KDFAQVEANL ADWQSIQVPG
NWETQGFGHA IYLDERYPFS TTWPDAPEDH NPTGSYRREI NLPQSWQDKQ VFLHIGAARS
ALTAFVNGQE VGYSQGAKTP AEFDITPYLN QEQNLLALQI IRWSDASYLE SQDMLRVSGI
ERDVYLYATE KQRISDIDAQ YQMSANLDKA EVALKLKLEN HAKAKDVSLS YRLLSPQGVE
VSRGEQKIAK LAKQDTRQFD FPLNSPMLWS AETPNLYQLI VSLNDNQGEL LQASSQHLGF
RRVEINNGQL LVNNKAITIR GVDRHETDPD TGHVVSRASM ETDIRLMKQN NINAVRSSHY
PNDPYWLSLT DKYGLYVIDE ANIESHPLAI DKNTQLGNEM SWLPAHQARV ERMVERDKNH
PSIIIWSLGN EAGEGKLFAA LYDWIKQRDP SRPVQYEPAG QHAYTDIVAP MYPSIERIEK
YAKEHQDRPL IMIEYAHAMG NSVGNLQDYW DVIEQYPQLQ GGFIWDWVDQ SLAFTNENGQ
RYWAYGKDYH PDMPTDGNFL NNGLVDPDRN PHPHLSEVKK VYQPLKLTEL TRNQQDVTFT
LSNRYDFIDT LGLNLIWTLQ QDGRPVAEGL VAMPQVKADT SQVLNFTLPE SAIKTMQQSP
QYEYQLLLEV KVDTPQPMLP SDHLIAFEQF ALQSAKPVTA KTIDAIKETR DSWILGKNNA
QYLFNKDTGW LTDIRVEGES QLKSPLIANF WRAPTDNDLG NQMPKWAGMW QDAGQELELV
SITRSKGQHA ALKVTHQHPK LGFTLTSSYR VSDQAKLLVS SDFTPGDGEL ADLPRFGFSA
RLPFEVRFMH YFGRGPEETY TDRKTGNPVA WYALPIEQTF HRYSRPQETG QRTDVRYVAV
TNNKGAGLLA QTTMNSEMLQ TSLWPFAQAD IDFRDGDAEG SASGLVPVTA NHGAEIPIRD
FVTWNIDYKQ MGVGGDTSWG RPVHAPYRIA PKAMSFSFSL EPISANTDIK KQARGLQ
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