| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0560 |
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| Symbol | |
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| ID | 5660960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 686767 |
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| End bp | 687927 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641235105 |
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| Product | O-succinylhomoserine (thiol)-lyase |
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| Protein accession | YP_001500423 |
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| Protein GI | 157960389 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGAGC GTAAATTAGC CACTGCGGCT GTACGTCAAG GAATTGAGTC CGATAGCCAG
CATGGTGCAG TAGTACCGCC GATCTATCTT TCTACTAATT ACTCTTTTGA TGGTCATAAA
AACCCAAGAG ACTTCGACTA TAGCCGCTCA GGTAACCCTA CACGTTCTAT TTTAGGTGAT
GCCATTGCCG AGCTTGAAAA AGGCTCTACG GGCGTAGTGA CTTGCACCGG TATGGCGGCA
ATAACGTTGG CCACTAGCTT GCTTGGACCT GATGATCTTC TTGTTGTTCC CCATGATTGT
TATGGTGGTA GTTACCGCCT ATTTACTAAT TTGGCCAAAA AAGGTCAGTT CAAGTTATTA
GTGGTCGATC AAACCGACTC ACAGGCCCTT AATCAGGCTA TAGCGCAAAA ACCTAAGATG
GTATGGCTAG AGACGCCGTC GAATCCACTG CTGCGTGTGG TCGACATTAA GGCCATCTGT
GCTGCGAGCC ATGAAGTGGG CGCACTGGTG GTTGTCGATA ACACTTTCCT GTCGCCGATT
TTACAGCAGC CGTTATTACT TGGCGCCGAT ATAGTGATCC ATTCCACCAC CAAATATATC
AATGGTCATA GCGATGTGGT TGGCGGCGCG GTCGTGGCAA AGGATCCTGA GTTAGGTGAA
CTGCTTCATT GGTGGTCAAA CACCCTAGGG CTAACGGGGT CAGCGTTTGA CAGCTACCTG
ACTTTGCGCG GAATTCGTAC ACTTGCAGTA CGAATTCGCG AACATCAGGC GAATGCGCAG
CGAATTCTTG ATACCCTTGT TAACCATCAG GCCGTCTCCA AGATATACTA CCCGGGGCTG
AAAGAGCATC CGGGGCATGA GATTGCGGCT AAACAGCAAA AGGGCTTCGG TGCCATGCTG
AGCTTTGAAC TTAAGGGTGG AGAACAAGAG TTAGTCACAT TCTTAAAAAA TCTTAGCTGT
TTTTCAGTTG CAGAGAGCCT GGGTGGCGTA GAGAGTTTAG TCGCCGTTCC TGCAACCATG
ACGCACAGAG CGATGGATCC AGAGGCTCGC GCCGAAGCTG GCGTTAAAGA TACGCTTATT
CGTCTGTCTG TGGGTATCGA AGATGCCGAT GATCTTGTTG CCGATATTGA AGCTGCGCTT
AATGCCGCAG CCGCTTGTTA A
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| Protein sequence | MTERKLATAA VRQGIESDSQ HGAVVPPIYL STNYSFDGHK NPRDFDYSRS GNPTRSILGD
AIAELEKGST GVVTCTGMAA ITLATSLLGP DDLLVVPHDC YGGSYRLFTN LAKKGQFKLL
VVDQTDSQAL NQAIAQKPKM VWLETPSNPL LRVVDIKAIC AASHEVGALV VVDNTFLSPI
LQQPLLLGAD IVIHSTTKYI NGHSDVVGGA VVAKDPELGE LLHWWSNTLG LTGSAFDSYL
TLRGIRTLAV RIREHQANAQ RILDTLVNHQ AVSKIYYPGL KEHPGHEIAA KQQKGFGAML
SFELKGGEQE LVTFLKNLSC FSVAESLGGV ESLVAVPATM THRAMDPEAR AEAGVKDTLI
RLSVGIEDAD DLVADIEAAL NAAAAC
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