Gene Spea_0551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0551 
Symbol 
ID5660951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp677716 
End bp678639 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content50% 
IMG OID641235096 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_001500414 
Protein GI157960380 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAACTA TGGCAAAGAT TATGGTGACG GGCGCAACAG GTTTATTGGG GCGGGCCGTG 
GTCAAGCAGC TAAAGCAGTG CAGTGATTTT CAGGTAATAG AGTGTGGATT TAGTCGAGCG 
AGTATCGGTA TTGAAGTGCT AGATCTCACT CAGTCGGAGC AGGTATTTGA ATTCGTGGCT 
AAACACAAAC CCGATGCCAT AGTACACTGC GCCGCAGAGC GTCGCCCCGA TGTGTCTGAG 
CAAGCCCCTC AGGCCGCATT AGCTCTAAAC GCGGAGGCTA GCGACTCGTT AGCAAAAGCC 
GCCAGCCAAA ATGGGGCCTG GCTGTTATAC ATCTCCACCG ACTATGTGTT TGATGGCACA 
GCCCCTAAAT ATGAAGAGTC GAGTCAGACT AATCCTGTTA ACTTTTACGG CCAGTCAAAA 
CTACAAGGGG AGAACCTTGT GGCTGATTCT GAGCCTAGTT TTGCTATTTT GCGCCTGCCG 
ATCCTCTATG GAGATGTGGA AAGCCTAAAC GAATCCGCAG TTATGGTGTT ACTCAAGCAT 
TTACTCGCCC CTCATGTGGA GTACCTCGAT GACTGGGCCG TAAGAAGCCC AACTTCAACG 
GCAGATATCG CCGTCGCCAT CCACGAGATG TTAGTGTTGC AGCTAGCTGG AAAGCAGCTC 
TCTGGGCGTT ATCACTTTAG TGCCGAGGAG ACCATGAGTA AGTATCAGAT GCTATTAGTC 
ATGGCAGAGA TCCTCGGGCT AGACACGGGA CACCTCATTG CTGTGACATC CCCCACAGAT 
AGCGCTAAAC GTCCAAAGGA CTGCAGCCTA AGCTGTGAGC GACTTGCCAG TTTAGGGATT 
AAAAGCAGGC TACCTTTTAA GGTCGGAATA GAGAGCGCCT TGTTGCAGTC TTCAGTTGTA 
CAGCAATGGC TTGCTCAAAG ATGA
 
Protein sequence
MVTMAKIMVT GATGLLGRAV VKQLKQCSDF QVIECGFSRA SIGIEVLDLT QSEQVFEFVA 
KHKPDAIVHC AAERRPDVSE QAPQAALALN AEASDSLAKA ASQNGAWLLY ISTDYVFDGT 
APKYEESSQT NPVNFYGQSK LQGENLVADS EPSFAILRLP ILYGDVESLN ESAVMVLLKH 
LLAPHVEYLD DWAVRSPTST ADIAVAIHEM LVLQLAGKQL SGRYHFSAEE TMSKYQMLLV 
MAEILGLDTG HLIAVTSPTD SAKRPKDCSL SCERLASLGI KSRLPFKVGI ESALLQSSVV 
QQWLAQR