| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0516 |
|---|
| Symbol | rbsC |
|---|
| ID | 5660916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 630384 |
|---|
| End bp | 631358 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641235054 |
|---|
| Product | ribose ABC transporter permease protein |
|---|
| Protein accession | YP_001500379 |
|---|
| Protein GI | 157960345 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGT CAATTACAGC GCAGCCATTT TATAAGCGCA TCAATAAAGC GTGGTTGATT
GAGAACAAGT CTCTCATCGC CTTGTTTAGT CTTATTTTTG TGGTGTCGTT ACTGAGCCCA
AACTTTTTAA CCGTCGATAA CTTACTCAAT ATTCTGCGTC AGACTTCAAT CAACGCAATT
ATTGCCGTGG GTATGACTAT CGTTATCCTG ACCGCTGGTA TCGACCTAAG CGTCGGCTCG
GTTTTGGCGT TAAGTGGCGC AATCGTGGCG ACCCTCATCG GCATGGATGT GCCTGTGGTT
GTGGCTCTAC CGGTAGCGTT AATTGCCGGC GCGGCGTTAG GTGCTATCAG CGGTATTATC
GTGGCCAAGG GCAAGGTGCA GGCCTTTATT GCAACGCTTG TTACCATGAC GCTGCTTCGC
GGCGTAACTA TGGTGTACAC CAACGGTCGC CCTGTACCGA CAGGCTTTAG TGACACCGCA
GACAGCTTTA CCTGGTTAGG TACCGGCTAT GTGCTAGGCA TTCCTGTGCC AGTGTGGTTG
ATGGCAATGG TGTTTACTGG TGCCTGGTAT CTACTAAACC ATACCCGTTT TGGCCGCTAT
ATTTACGCTG TGGGTGGTAA TGAGTCGGCG GCGCGTTTAT CGGGTATTGC GGTTGATAAA
GTTAAGATTG CAGCTTACGC CATTTGTGGC TCTATGGCTG CATTGGCGGG CATTATCGTC
ACGGCGCGCC TGTCTTCGGC GCAGCCAACA GCTGGTATGG GCTACGAGCT AGATGCGATT
GCGGCGGTAG TGTTAGGTGG CACCAGCTTA ATGGGTGGCA AGGGGCGTAT CATGGGCACT
TTAATTGGCG CACTGATTAT TGGCTTCTTG AATAACGCCT TAAACCTGCT CGATGTGTCG
TCTTATTATC AGATGATTGC CAAAGCTAGC GTGATCTTGC TTGCGGTACT TATCGACACT
AAACAAAAAG CCTAG
|
|---|
| Protein sequence | MSQSITAQPF YKRINKAWLI ENKSLIALFS LIFVVSLLSP NFLTVDNLLN ILRQTSINAI
IAVGMTIVIL TAGIDLSVGS VLALSGAIVA TLIGMDVPVV VALPVALIAG AALGAISGII
VAKGKVQAFI ATLVTMTLLR GVTMVYTNGR PVPTGFSDTA DSFTWLGTGY VLGIPVPVWL
MAMVFTGAWY LLNHTRFGRY IYAVGGNESA ARLSGIAVDK VKIAAYAICG SMAALAGIIV
TARLSSAQPT AGMGYELDAI AAVVLGGTSL MGGKGRIMGT LIGALIIGFL NNALNLLDVS
SYYQMIAKAS VILLAVLIDT KQKA
|
|---|
| |