Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0506 |
Symbol | |
ID | 5660906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 620104 |
End bp | 620817 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641235044 |
Product | TPR repeat-containing protein |
Protein accession | YP_001500369 |
Protein GI | 157960335 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.979581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAGTT TAGCTATCGG CATTGCTGTC ACCTTATGTG CAGTTATCAC CCTAATTTGG CGTCATCATC ACTCTAGTCA AAAGCATGGT GTAACCCTGA TAGTTAAGCC TTTCGATGAT GGAATTGATG AGCACTCTGT CAACATTAAG GTACCTACGG TGCTATCTGT AGTGCTCTTT ACAACGACAC TATTAATTTA CGTACAATTA GGCCATTTCA ATGGTTGGAA TAAAGGAGTA GTCGACACAA ATATTGATTA CCTGATCACC GCAGAAATCA ATAGAAATGC AAAAAAAGTC AATGAACAAC CTAATAATGA AATTGCATTA TTAAATTTGG CTCAATCCTA TGTGGATGGC GGCCTGTATA GCGAATCGGT TCAAACCTTC GATACCTTAC TCAAGCTCAC GGGCGATGAT GCCAACATTA TTGGCATGAA AGCTAATGCC ATGTATTACC GCGACAACAG AGAGATGAGT TTAGACATTG ACTTAGTTAT CGCCAGAGCC TTAGCACTCG ACGAATACGA ACCGCAATCT CGTTTATTAC TTGCTACCCA CGCTTACCTT AGCGGCGAGT TTGAAAAGGC CATCGAGCAA TGGCAGAAAC TACTCGAAAG CAAACAGCCA AACGTTAACC GAGCTGCAAT TAATAATGCA ATTTTAAGAG CCGAGCAAAA AATAGCTAAT CGTTCAGTGG CTGCATCTGA GTAA
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Protein sequence | MNSLAIGIAV TLCAVITLIW RHHHSSQKHG VTLIVKPFDD GIDEHSVNIK VPTVLSVVLF TTTLLIYVQL GHFNGWNKGV VDTNIDYLIT AEINRNAKKV NEQPNNEIAL LNLAQSYVDG GLYSESVQTF DTLLKLTGDD ANIIGMKANA MYYRDNREMS LDIDLVIARA LALDEYEPQS RLLLATHAYL SGEFEKAIEQ WQKLLESKQP NVNRAAINNA ILRAEQKIAN RSVAASE
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