Gene Spea_0501 details

Gene Information

• Locus tag: Spea_0501
• ID: 5660901
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 614605
• End bp: 615147
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 641235039
• Product: RNA polymerase sigma factor SigZ
• Protein accession: YP_001500364
• Protein GI: 157960330
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02959] RNA polymerase sigma factor, SigZ family

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTTG AAAATATTTG GTCTGCTTAT CGACGTCAAT TGGAAGCATT CTTACACTCC 
AAAGTGTCCA ATGCTGCTGA TGTTGAAGAT TTACTGCAGG AGATATTAAT TAAAACCCAC 
ACTGGCCTTG ATAGTCTGCA AAAAGGGGAG AGTATTCAAG CCTGGTTGTT TCAGATCGCC 
AATCGAACCA CTATTGATTT TTATAGAAAA AAAGCGCGTC TTAAAGAGTT AGATCCAGAA 
GAGTTATGGT ATCAAGAGAA GCAGCAAGAT ATTAAGGCAG AGCTAATCCC CTGTATCGAA 
CCGTTTCTAA CGGCGCTGCC TGATGATATG GCATCGTTAC TGCGTGCTAT CGACTTAGAG 
GGGAAGTCTC AAAAGGCATA CGCGCAGGAG AAAGGGATCA ACTACACCAC CCTTAAATCT 
AAAGTGCAAA AGAGCCGAGC AACACTAAGG GGGCTGTTTG AGGGGTGTTG TCATTACAGT 
TTAGATCCAC AGGGTAACCT TATCGACTTT GAACAAAAAT CTGCGTCATG CAAAAAATGC 
TAA 

 

Protein sequence

MKLENIWSAY RRQLEAFLHS KVSNAADVED LLQEILIKTH TGLDSLQKGE SIQAWLFQIA 
NRTTIDFYRK KARLKELDPE ELWYQEKQQD IKAELIPCIE PFLTALPDDM ASLLRAIDLE 
GKSQKAYAQE KGINYTTLKS KVQKSRATLR GLFEGCCHYS LDPQGNLIDF EQKSASCKKC