Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0466 |
Symbol | |
ID | 5660866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 573816 |
End bp | 575906 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641235004 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001500329 |
Protein GI | 157960295 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0862739 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATCA GCAAAAAAAT TTCAAAAAAT CCATGGCTCC TTTGCCTTCT TATGACGATT TTAACCGTTG CACTGGGTAT GCTTTGGATA TTTAGCTCTC CATCACAATC CCCTGAAATC CAGATCATTA TCCCCTTACT CTTATTGGCT AATGTCGCAC TCCTCGGCAC GCTTTGGCTG CATTTTTATC ACCAGCCCTC CCAGATACAA GAGCTAGATG ACGAGAGCTC GACTGACATT GGACAATCCG CTAACGCTCG CTCTAATATC GCTAAGTTCC ACTCATTAAA GCAATTAAAA GAAAAGCGAG AACAATGCAG TAAACACAAG CAGTTCAAAA CTGTTCAGGA GCAGAACCAA GAGAAAAACC AAGAGGAAAT GCAGACAAAT GATCCACTGC TTAAGGCTGT TTTAGAGTCG GCAGCGGTTG CCATTTATGC CATCGACGAT AAAGGAAAGT GCATTTTTGC CAACCCGATA TGTGCTCAAT TACTCGGATA CACCAGCCCA GAGCAACTAC TGAACTTCAA TATGCACGAG CTGATCTATC AAAACCACTC TTGCACAGAA GCAACGCTTC CACTCAGTAA TGGAGAGGTT AAAGAGGATA TTTTTTGGCG AGCCGACGGC AGTAGCTTCC CTGTTGATTA CAAATCACAA CCTCTAGTAC TACAGCACAA CAGAAACGGT GCGGTGATCT CTTTTTATGA CAATAGTGAG CGTCTCGAAG CGGAAGCACT TATTCGCCAT CAAGCCCACT ACGATACCTT AACTGAGCTA CCTAACAGAT TTTTAGCGCT AAAACGACTC GAACAATTAG TCGAAGCTAG TGAGAGAAGC GGTCAGATGA TTGCAGTTAT CTTTCTCGAT TTAGATGACT TTAAGAAGAT TAATGATTCC TTAGGCCATG AAGCAGGTGA CCAACTACTG ATCAGTGCAT CAAAGCGCTT GCTGAATGCC ACCCGATCCG AAGATACCGT TGGCCGTTTA GGAGGCGATG AATTTATCAT ATTGCTGGAT GGTCTATCGA GCGCTAGCGA CGCCCAACCC CTAGCCGAGA ATCTCATTGG CGGCTTTAGA AAGCCTTTCT ATATCGATAA TCGGCAGCTA GTGCTTACCG CCAGTATTGG TATCGCCATC TACCCTAATG ACGGCGAAAC ATCATCAGAG CTGTTACGAA ATGCCGACTC GGCCATGTAT CACACCAAAA GTATTGGCCG AAATACCTAC TCCTACTTCA CCCATGCGAT GAATAAAGAG GTATCACGCC GCCTTGCGAT TGAAGAGCAG ATCCACGGAG CCTTAGAACG GGGAGAGCTA CAAGCTCACT TTCAAATTCA ACTCGATATC CGAGATGGCA GTATCATGGG GGCCGAAGCC CTGCTACGTT GGAATAATCC AACCCTAGGG AACGTATCAC CTGCCGAGTT CATTCCTATT GCCGAGCAAA CAGGAGTGAT TGAGCCAATG GGAGAGTTTA TTCTTAAATG CGCGCTAGAG GCTGCACGCA CCTGGCAGAA GTTGTTTAAT GACAAGTTTC GAGTCGCCAT TAACCTTTCA CCAAGACAGT TTAGAAATCC AAATCTGGTC CAGCTCATTA CAGATCAAGT TTACAAATTT GGCATGCGCC CCGATGATCT AGAACTTGAA ATTACCGAAG GTGTACTGCT GAGTGGCCAC GCCTATACTT TGGATGCCCT TAAGCAACTA AGCAATGCGG GTTTTTGTAT CTCAATGGAT GATTTTGGTA CTGGTTACTC CTCACTAAGC TACTTAAGAA CCTATCCGTT CCAGATCCTC AAGATTGATC GCAGCTTCAT TAGTGATATG AACAAAGACG GTAAGAGTAA CGAGCTGATC ATCGCTACTA TCGAGATGGC TCACGCTTTG GGGATCAGAG TCATTGCCGA AGGGGTCGAG ACTCAAGAGC AATTAGATGA GCTTAGCTTT ATGATGTGTG ATTATGCTCA AGGCTTTCTA ATCAGTAAGG CGGTACCTCT AACTGAGTTG CTCAAAATAG GTACTCACTA CAAAGAGCTC CACGAAAACT TAGCGACTCA AGAGTTGCCG ATCCCACTGA CAGCTATGTA G
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Protein sequence | MQISKKISKN PWLLCLLMTI LTVALGMLWI FSSPSQSPEI QIIIPLLLLA NVALLGTLWL HFYHQPSQIQ ELDDESSTDI GQSANARSNI AKFHSLKQLK EKREQCSKHK QFKTVQEQNQ EKNQEEMQTN DPLLKAVLES AAVAIYAIDD KGKCIFANPI CAQLLGYTSP EQLLNFNMHE LIYQNHSCTE ATLPLSNGEV KEDIFWRADG SSFPVDYKSQ PLVLQHNRNG AVISFYDNSE RLEAEALIRH QAHYDTLTEL PNRFLALKRL EQLVEASERS GQMIAVIFLD LDDFKKINDS LGHEAGDQLL ISASKRLLNA TRSEDTVGRL GGDEFIILLD GLSSASDAQP LAENLIGGFR KPFYIDNRQL VLTASIGIAI YPNDGETSSE LLRNADSAMY HTKSIGRNTY SYFTHAMNKE VSRRLAIEEQ IHGALERGEL QAHFQIQLDI RDGSIMGAEA LLRWNNPTLG NVSPAEFIPI AEQTGVIEPM GEFILKCALE AARTWQKLFN DKFRVAINLS PRQFRNPNLV QLITDQVYKF GMRPDDLELE ITEGVLLSGH AYTLDALKQL SNAGFCISMD DFGTGYSSLS YLRTYPFQIL KIDRSFISDM NKDGKSNELI IATIEMAHAL GIRVIAEGVE TQEQLDELSF MMCDYAQGFL ISKAVPLTEL LKIGTHYKEL HENLATQELP IPLTAM
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