| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0466 |
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| Symbol | |
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| ID | 5660866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 573816 |
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| End bp | 575906 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641235004 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001500329 |
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| Protein GI | 157960295 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0862739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATCA GCAAAAAAAT TTCAAAAAAT CCATGGCTCC TTTGCCTTCT TATGACGATT
TTAACCGTTG CACTGGGTAT GCTTTGGATA TTTAGCTCTC CATCACAATC CCCTGAAATC
CAGATCATTA TCCCCTTACT CTTATTGGCT AATGTCGCAC TCCTCGGCAC GCTTTGGCTG
CATTTTTATC ACCAGCCCTC CCAGATACAA GAGCTAGATG ACGAGAGCTC GACTGACATT
GGACAATCCG CTAACGCTCG CTCTAATATC GCTAAGTTCC ACTCATTAAA GCAATTAAAA
GAAAAGCGAG AACAATGCAG TAAACACAAG CAGTTCAAAA CTGTTCAGGA GCAGAACCAA
GAGAAAAACC AAGAGGAAAT GCAGACAAAT GATCCACTGC TTAAGGCTGT TTTAGAGTCG
GCAGCGGTTG CCATTTATGC CATCGACGAT AAAGGAAAGT GCATTTTTGC CAACCCGATA
TGTGCTCAAT TACTCGGATA CACCAGCCCA GAGCAACTAC TGAACTTCAA TATGCACGAG
CTGATCTATC AAAACCACTC TTGCACAGAA GCAACGCTTC CACTCAGTAA TGGAGAGGTT
AAAGAGGATA TTTTTTGGCG AGCCGACGGC AGTAGCTTCC CTGTTGATTA CAAATCACAA
CCTCTAGTAC TACAGCACAA CAGAAACGGT GCGGTGATCT CTTTTTATGA CAATAGTGAG
CGTCTCGAAG CGGAAGCACT TATTCGCCAT CAAGCCCACT ACGATACCTT AACTGAGCTA
CCTAACAGAT TTTTAGCGCT AAAACGACTC GAACAATTAG TCGAAGCTAG TGAGAGAAGC
GGTCAGATGA TTGCAGTTAT CTTTCTCGAT TTAGATGACT TTAAGAAGAT TAATGATTCC
TTAGGCCATG AAGCAGGTGA CCAACTACTG ATCAGTGCAT CAAAGCGCTT GCTGAATGCC
ACCCGATCCG AAGATACCGT TGGCCGTTTA GGAGGCGATG AATTTATCAT ATTGCTGGAT
GGTCTATCGA GCGCTAGCGA CGCCCAACCC CTAGCCGAGA ATCTCATTGG CGGCTTTAGA
AAGCCTTTCT ATATCGATAA TCGGCAGCTA GTGCTTACCG CCAGTATTGG TATCGCCATC
TACCCTAATG ACGGCGAAAC ATCATCAGAG CTGTTACGAA ATGCCGACTC GGCCATGTAT
CACACCAAAA GTATTGGCCG AAATACCTAC TCCTACTTCA CCCATGCGAT GAATAAAGAG
GTATCACGCC GCCTTGCGAT TGAAGAGCAG ATCCACGGAG CCTTAGAACG GGGAGAGCTA
CAAGCTCACT TTCAAATTCA ACTCGATATC CGAGATGGCA GTATCATGGG GGCCGAAGCC
CTGCTACGTT GGAATAATCC AACCCTAGGG AACGTATCAC CTGCCGAGTT CATTCCTATT
GCCGAGCAAA CAGGAGTGAT TGAGCCAATG GGAGAGTTTA TTCTTAAATG CGCGCTAGAG
GCTGCACGCA CCTGGCAGAA GTTGTTTAAT GACAAGTTTC GAGTCGCCAT TAACCTTTCA
CCAAGACAGT TTAGAAATCC AAATCTGGTC CAGCTCATTA CAGATCAAGT TTACAAATTT
GGCATGCGCC CCGATGATCT AGAACTTGAA ATTACCGAAG GTGTACTGCT GAGTGGCCAC
GCCTATACTT TGGATGCCCT TAAGCAACTA AGCAATGCGG GTTTTTGTAT CTCAATGGAT
GATTTTGGTA CTGGTTACTC CTCACTAAGC TACTTAAGAA CCTATCCGTT CCAGATCCTC
AAGATTGATC GCAGCTTCAT TAGTGATATG AACAAAGACG GTAAGAGTAA CGAGCTGATC
ATCGCTACTA TCGAGATGGC TCACGCTTTG GGGATCAGAG TCATTGCCGA AGGGGTCGAG
ACTCAAGAGC AATTAGATGA GCTTAGCTTT ATGATGTGTG ATTATGCTCA AGGCTTTCTA
ATCAGTAAGG CGGTACCTCT AACTGAGTTG CTCAAAATAG GTACTCACTA CAAAGAGCTC
CACGAAAACT TAGCGACTCA AGAGTTGCCG ATCCCACTGA CAGCTATGTA G
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| Protein sequence | MQISKKISKN PWLLCLLMTI LTVALGMLWI FSSPSQSPEI QIIIPLLLLA NVALLGTLWL
HFYHQPSQIQ ELDDESSTDI GQSANARSNI AKFHSLKQLK EKREQCSKHK QFKTVQEQNQ
EKNQEEMQTN DPLLKAVLES AAVAIYAIDD KGKCIFANPI CAQLLGYTSP EQLLNFNMHE
LIYQNHSCTE ATLPLSNGEV KEDIFWRADG SSFPVDYKSQ PLVLQHNRNG AVISFYDNSE
RLEAEALIRH QAHYDTLTEL PNRFLALKRL EQLVEASERS GQMIAVIFLD LDDFKKINDS
LGHEAGDQLL ISASKRLLNA TRSEDTVGRL GGDEFIILLD GLSSASDAQP LAENLIGGFR
KPFYIDNRQL VLTASIGIAI YPNDGETSSE LLRNADSAMY HTKSIGRNTY SYFTHAMNKE
VSRRLAIEEQ IHGALERGEL QAHFQIQLDI RDGSIMGAEA LLRWNNPTLG NVSPAEFIPI
AEQTGVIEPM GEFILKCALE AARTWQKLFN DKFRVAINLS PRQFRNPNLV QLITDQVYKF
GMRPDDLELE ITEGVLLSGH AYTLDALKQL SNAGFCISMD DFGTGYSSLS YLRTYPFQIL
KIDRSFISDM NKDGKSNELI IATIEMAHAL GIRVIAEGVE TQEQLDELSF MMCDYAQGFL
ISKAVPLTEL LKIGTHYKEL HENLATQELP IPLTAM
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