Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0456 |
Symbol | |
ID | 5660856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 565038 |
End bp | 566078 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641234994 |
Product | OmpA domain-containing protein |
Protein accession | YP_001500319 |
Protein GI | 157960285 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAACA AGACACTAAT TGCACTCGCA TTAATAGGTA CTTGCGGTTA CGCCAATGCA GCCGATGTTG ATAACACTTG GTACATAGGT GCAGGTGCAG GCCAAAGCAA CTATGAGTCA GTTGACGCCG CTAGCCACCT AGGCGACGGC AGCGATTTAG CTTGGAATGC CCTAGTAGGT TATCAACTAA ACAAATATTT AGCCTTCGAA GCTGGCTGGC AAGATCTGGG TGCTACCGAT GATACTCACA TGTGGGGTGG TTTAGACGGT AGCCAGAAAA TAGACGTTGA CGGCTTTACT CTGGGTGTTG TGGGTACTTT ACCGCTATCA GAAAAATGGT TCTTAACTGG TGAAGCTGGT GCTTATCAAT ATCACCTAGC ACACCAGATG AGTGCCGATA AGTATGTTAG CGCGATGGAT ACAGCCCCTT ACTTTGGTGC AGGTGTGGGT TACAACATCA CAGATTCTTT GGCGATTTCT GCTAAGTACC GTCGTTTTGC CAAAATCGAT GAAACAGCAT GGAACACGGC AAACATGGAC GCACAGACAG TGGGTCTACA GCTGACTTAT CGCTTCGGAG TGAAGGCTGC GACAACAACA GCAGTTGTAC TACCTGCCGT GATTGAGAAG CAGACTAAAC CTATGCCTCG TCCAGAGCCA AAGCCTGAGC CTAAGTATGA AATTCACACC GAAAAGAGCA GTGTAGCCGT ACTATTTGGG TTTGATTCTT CAGAGCTTAA TAGCACAGCC AAGGCCAAGC TAGACCAAGT TATCAAGCTT TCAAAGAGTA AAGATCAAGA TGTGATCTTA CTTAACGGTC AATCAGATAA CCAAGGTGAT AGCCAATATA ACCTTAAGCT ATCTGAAAAA CGTGTACAGC ACGTAGAAGC CTACTTAGTT TCTCACGGTG TAGAAGTGAA GAAGATCGAC ACTCAAGCCG TTGGCGAGCA GGATGCTCAC GCTAATTTAC GTAAAGACCG CGCACTAGAG CGCCGTGTAA TCGTAACCTT AACAAGCCAA GAAAAAGTAC AAGCTTCTTA A
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Protein sequence | MMNKTLIALA LIGTCGYANA ADVDNTWYIG AGAGQSNYES VDAASHLGDG SDLAWNALVG YQLNKYLAFE AGWQDLGATD DTHMWGGLDG SQKIDVDGFT LGVVGTLPLS EKWFLTGEAG AYQYHLAHQM SADKYVSAMD TAPYFGAGVG YNITDSLAIS AKYRRFAKID ETAWNTANMD AQTVGLQLTY RFGVKAATTT AVVLPAVIEK QTKPMPRPEP KPEPKYEIHT EKSSVAVLFG FDSSELNSTA KAKLDQVIKL SKSKDQDVIL LNGQSDNQGD SQYNLKLSEK RVQHVEAYLV SHGVEVKKID TQAVGEQDAH ANLRKDRALE RRVIVTLTSQ EKVQAS
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