| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0442 |
|---|
| Symbol | |
|---|
| ID | 5660842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 549258 |
|---|
| End bp | 550748 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641234979 |
|---|
| Product | selenocysteine synthase |
|---|
| Protein accession | YP_001500305 |
|---|
| Protein GI | 157960271 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR00474] seryl-tRNA(sec) selenium transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAG CTATCAATTC CACTCAAGCC CTTTACCGTT GTTTACCTGC AATGGACAGC
TTGCTGCTGA TACCTCAAGT GATAAGTTTT ATCGACCAGC AAGGCAAGCC CTGGATTAAA
TCGTTACTGG CGCAAATGCT TCAAGATGCA CGCCAACATA TTGCCGAGCA GCAAAGCTTG
CCAAGCTGGT GCTTAGATTT AAGCAATATC ATTACCGAGT TAGCCCGCCG TATTGCCAAA
GCCCAGCGCC CAAGCATGAC CCCAGTAATT AACCTTACCG GCACCATATT GCATACCAAT
CTTGGTCGCT CGCAGATGTG TGAGGCCGCT ATCGATGCTG TTACCCAAGT GATGCGCAGC
CCAGTGCCAC TTGAGTTTGA TATGGGCCAA GGTAAACGCG GTCACCGCGA TAGCGCAATC
TCTGCATTGA TTCATGAGCT AACTGGCGCT GACACTTGTT GCATCGTCAA TAACAACGCC
GCCGCCGTTT TGCTAATGCT TGCTGCCACC GCTGCGGGTA AAGAGGTGAT TGTGTCTCGC
GGTGAGCTGG TGGAAATTGG CGGCGCGTTT CGTATTCCCG ACATTATGGC GCAGGCGGGT
TGCAAGCTGG TGGAAGTCGG CTGCACCAAC CGAACTCACC TTAAAGATTA CGCCGCGGCG
ATAACTGAAG ACACCGCTGC GATTATGAAG GTGCACACCA GTAATTATCA TATTAGTGGT
TTTACTAAGG TCACCGAAGA AGCTGAATTA GCTGCCTTGT GTAAAGAACG CGGCATCGCA
CTGATTTCCG ATCTGGGCAG TGGTGCGCTG ACGGATCTGT CGCGCTTTGG TTTGTCAAAA
GAGCCGATGC CACAGCAGAT GCTTAAAGAT GGCGTCAACC TAGTGAGCTT TTCAGGTGAT
AAATTGCTCG GCGGGCCGCA AGCAGGCTTA GTGGTGGGTG ATGCCGAGCT AATTGCTAAG
CTGCAAGCGC ACCCGCTAAA GCGCGCACTG CGCTGTGACA AGATGACCTT GGCAGCGCTC
GAAGCCACGC TTATGCAGTA TCGTAATCCC ACAAGTCTCG ATACTCAATT GCCTATTTTT
AGAAAACTCT CCCGTCCATT AGCAGAGCTT GAAACGCTGG CGCAGCAACT CACTACGGTA
TGTAGCCCGG TACAAACACA GTTTAATGTG ACAATAAAAC CTTGCCAAAC TCAGGTGGGC
AGTGGCTCAC AGCCAGATGT GTTGCTGGAC TCTATCGCGC TGTGCTTCTC TGTAAATGCC
AATGCCGTCA AAGAGCACAA CTCGCTAAGT GTGTTGCAAC TAGATAAGTT TTTTAAAGCC
GCAAGTTTGC CGATTATTGG CCGCATTACA GCTAACCAGC TTTGGCTCGA TCTGCGTGGT
ACTGACAACG ATACCCAGCT TATCGAAGTC CTGACAAAAA CCTTAATCGA GTTTGAGCAA
GCTCATATCA ACACGCTTTC CGTATTACCA AGAGTAGAGG CTCAGTCATG A
|
|---|
| Protein sequence | MTQAINSTQA LYRCLPAMDS LLLIPQVISF IDQQGKPWIK SLLAQMLQDA RQHIAEQQSL
PSWCLDLSNI ITELARRIAK AQRPSMTPVI NLTGTILHTN LGRSQMCEAA IDAVTQVMRS
PVPLEFDMGQ GKRGHRDSAI SALIHELTGA DTCCIVNNNA AAVLLMLAAT AAGKEVIVSR
GELVEIGGAF RIPDIMAQAG CKLVEVGCTN RTHLKDYAAA ITEDTAAIMK VHTSNYHISG
FTKVTEEAEL AALCKERGIA LISDLGSGAL TDLSRFGLSK EPMPQQMLKD GVNLVSFSGD
KLLGGPQAGL VVGDAELIAK LQAHPLKRAL RCDKMTLAAL EATLMQYRNP TSLDTQLPIF
RKLSRPLAEL ETLAQQLTTV CSPVQTQFNV TIKPCQTQVG SGSQPDVLLD SIALCFSVNA
NAVKEHNSLS VLQLDKFFKA ASLPIIGRIT ANQLWLDLRG TDNDTQLIEV LTKTLIEFEQ
AHINTLSVLP RVEAQS
|
|---|
| |