| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0428 |
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| Symbol | |
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| ID | 5660828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 531806 |
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| End bp | 534379 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641234965 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001500291 |
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| Protein GI | 157960257 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATTG GCAAGAAAGC TGTCTTAGTG ATATTTGGGA TCTGTATCCC CCTCCTAGCC
GTAGCCTGCT TAGCAGGAAT GACCTGGTTA CATAGCGAAG TTGACGCTAT ACGTAGTTAT
GTCATAGAGA AAGAACTAGA GAGCATCCAG TCTCAAGTAA ACCGAGACCT CGAACGTTTT
CAGCTTCAGC TTGATAATTT TTCAATCAAT TATCAAATAG AAACTCCCAC CGATTTATTA
CCAGAGGCCG CATTATTTGG CAGTACTCAT GTGCTGCAAC TTAAGGATGG TCAACTCGAG
CCAATTGATA AACAACAGCC GATAATTCCG CAGCTGCCCA TGGAGCTGCT TGCAAGTGAG
CAGGCACAGG CTGGGGTATA TTTTGACAAG GTCCAAGCCT TAGGTTATCT CATTAGTATT
TCAGCTAAGG ATGCCGAATC TGAACGCTTA GTGAGCATTA GTCGACTCAC TGATGATTAT
CTCGCGACGT TAGGTTTTGT CGATTTTGCC ACTCAGATAA AAATTGAAGC TGGAAGCGCC
AAGCCTGGAT TAGTTTTGGC GGACAATACT GTCATTGCGC AATTAGCTAT TCCAGCGCTT
GTTCATCAAC AACCAGTACA CCTCTCTATT GCCTTCTCTA ATCAATTCTT CTCACGTATG
GCATGGCAGT ACAGCTTACT GACGTTAGGG GGATTAAGCT TAGTCATAGC TTTACAGTTA
ATGCTATTTA TCTGGCTCAG GAATGCGGTG TTTAAGCCTT TGAATTACCT CTCTGAGCAG
GTGGGGGGCT TAGGTCTTGA CTTAAAAGGC CGTGCTTACA TTAACGGAGC GGGTATTCAC
GGAACAGGCA AAAACGAGTT TGGCCAAGTC ACTGAGAGTA TTAACCAGTT ACTCGATAGT
CTCTATCGAC AAGAGAGTCA GTCTCAAGTC ACTTTGGAGT TTATTGCTGA AGCGGTGATC
TTGACTGACA TTCATTGTGA AGTGAGTTAT ATCAACCCCT ATGCCGAACG TCTGTTGCAG
CTGAGTAATG CACAGGCACA AGGTAAGAGG ATTCATGAAT TATTACCTGG TAATCAAAGC
TTAAGTGATA AAGTTAACGC CTTTATGCAA AGCCCATCGC TTAGTATTGA TTCTATATTC
TTACGTCTGA ATTGCGACTC TCCCAAGTTA TTGAGTGCCA GCTTAGCTCA CTTTTCTAAT
CATTCTGGAG AGATCATTGG GGCTGTGCTG GTATTAAAAG ACACGACTCA AGAAGCCTTG
CTAAAGCGTC AATTGCAGCG CCAGAGTTAT TTAGACCCAG TTACCGGTCT ACTAAACCGG
ACAACGTTTG AAGAGCGATT TATGGGGTAT GCTCAATCGT CCCAATCCTT AGCGGTAGTC
TATCTAGATC TAGAGCAGTT CAAACTCATC AATGACTCCA GTGGCCACGC TATAGGCAAC
AAGATGCTTA AAAAAGTGGC CAGAGTGATT GAGTCTTGCT TATCGGATAA TATGCTATTG
GGGCGCATAG GGGGCGATGA GTTTGGTTTG ATCGTTAGAG ATAGCTCAGC CCTAGCCGTA
GCCAAGTTAA TTAAGAAGAT CATTGCCGGT GTGGGTTGCC AAACCGTAAC GCATAACGAC
ACCTGCTATC GTGTTGGTGT AAGCGTTGGG GTAGCATTGT CACGCGTTAA TAAAGACACA
GATCTGCTCG GGCTACTCAA GGATGCAGAT ATCGCCTGTC TTGCTGCCAA GCGCAAGGGC
TGTAATCAGG TGCACTTCTA TGATGGTCGC GATATCGATT TAAGTTATCA ACGTAACGCG
CCTAAGTGGG CTGTTAGAAT CGTGCAGGCG ATTGAGCACA ATGAGCTTAT TCTCTACTAT
CAAAAGATAA AGTGTCTTTC ATCCCATAGC CATAGGCAGC GCCTTGAGAT ATTGCTAAGG
ATCCAAGAGC CTGGTGGTCG AATTTTGCCT CCTGCACAAT TTATTGCTGC GGCGGAGAGT
TTCAAACTTA TTGTCGATGT AGATAAAGAG GTCATTAGAA AGACCTTTCT GTGGTTGTCA
TTAAATGAGG GACTGTGGGA TGACCATTGC CTATCGATTA ATTTATCGGG TAGCAGTCTT
GGCGCTGAAG GTATGGTCGA CTTTATCTTG AGTCAACAAA AGCGCTTTGG CGTACCCAGT
AGTTGTATCT GCTTTGAGAT CACCGAAACC AGTGCCATTC AAAATCGTAG TCGTGCGATG
AAGATGCTAT TAGACTTGCG AAAGCGTGGC TTTGCGTTTG CACTGGATGA TTTTGGTAGC
GGTTTTGCCT CCTACGGCTA CCTTAAAGAG ATGCCTGTCG ATTACGTTAA GATTGATGGC
TGCTTCGTTA AAAACTTAGC CAGCAATGCC AAAGATTACG CTATCGTAAA GTCGGTTAAC
GATGTCTGCC GTGTAATGGG CATTGAGACT GTGGCTGAAT TTGTCGAAAA CCAAGAGATC
ATAGATAAGC TCGAGGTGAT TGGTATTAAC TATGCTCAGG GTTACGGTAT TGGCAGACCA
CAGCCTTTAG ACTCCTATCA AGGAATCTTA GCTCCAGAGA AACAGATGGC CTAA
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| Protein sequence | MQIGKKAVLV IFGICIPLLA VACLAGMTWL HSEVDAIRSY VIEKELESIQ SQVNRDLERF
QLQLDNFSIN YQIETPTDLL PEAALFGSTH VLQLKDGQLE PIDKQQPIIP QLPMELLASE
QAQAGVYFDK VQALGYLISI SAKDAESERL VSISRLTDDY LATLGFVDFA TQIKIEAGSA
KPGLVLADNT VIAQLAIPAL VHQQPVHLSI AFSNQFFSRM AWQYSLLTLG GLSLVIALQL
MLFIWLRNAV FKPLNYLSEQ VGGLGLDLKG RAYINGAGIH GTGKNEFGQV TESINQLLDS
LYRQESQSQV TLEFIAEAVI LTDIHCEVSY INPYAERLLQ LSNAQAQGKR IHELLPGNQS
LSDKVNAFMQ SPSLSIDSIF LRLNCDSPKL LSASLAHFSN HSGEIIGAVL VLKDTTQEAL
LKRQLQRQSY LDPVTGLLNR TTFEERFMGY AQSSQSLAVV YLDLEQFKLI NDSSGHAIGN
KMLKKVARVI ESCLSDNMLL GRIGGDEFGL IVRDSSALAV AKLIKKIIAG VGCQTVTHND
TCYRVGVSVG VALSRVNKDT DLLGLLKDAD IACLAAKRKG CNQVHFYDGR DIDLSYQRNA
PKWAVRIVQA IEHNELILYY QKIKCLSSHS HRQRLEILLR IQEPGGRILP PAQFIAAAES
FKLIVDVDKE VIRKTFLWLS LNEGLWDDHC LSINLSGSSL GAEGMVDFIL SQQKRFGVPS
SCICFEITET SAIQNRSRAM KMLLDLRKRG FAFALDDFGS GFASYGYLKE MPVDYVKIDG
CFVKNLASNA KDYAIVKSVN DVCRVMGIET VAEFVENQEI IDKLEVIGIN YAQGYGIGRP
QPLDSYQGIL APEKQMA
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