| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0422 |
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| Symbol | |
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| ID | 5660822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 518372 |
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| End bp | 522850 |
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| Gene Length | 4479 bp |
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| Protein Length | 1492 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641234959 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001500285 |
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| Protein GI | 157960251 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.144881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATAA TAATCAAAAA AATTTGGCTT AGCTTCATTC TATTATCGTT AACTTGCGCT
GTGCCAGCCT TGGCCAGCGG CGTAGTTCAG CGGGTGTTTA CAGCAAGCGA TGGTCTGATT
AATGGCACAG TGTTTGATAT AGGTTTCGAT GAACATGGTT TTACCTGGTT AGCGACGGGG
GAGGGCTTAT ATCGAGTCAG CAGCAATAAA GTTCGTCGCA TCGACAAGGT TGGCTTAAAC
TCCAAAATCA ACGATAGCCT ACTTTACCTC TCGGTTCCTC TTAGCAAACA GCACATCCTC
GTCAGCGGCA AGTACCAAGC CTATCTTTAT GATATTTACG CTAATCGATT TGTCGGCTTT
GGCAGTCCTG AATTATTTCC AGAGTACCGT GGTAGCGGCA TCGTATCGCA AATACAAGAT
AGCAACGGTG ATCGAATCCT TTTGACCTAT GACGGTGAGC TGCTTAGATT TAACTATCAA
AGCATGTCAC TTAAGCGAAT TAAGTTCCTG CCCAATAACC CCGATCACCC TTGGTGGAGA
ATGTTGTCTC TGTCTGAGAA TCGCCTGCTT GTCGGTCAAG AAAAGCATTT AGAGGTTCGT
GATCTTAATG GTGTGAGATT AGACGTTTTA CCCTGGAAAA AAGAGTGGGG CATGATAAAA
AATGTCATCA AGCATTCTAA TGGGCGCGTC TGGATCAGTT CGAGTAAGGG GCTATTTGAA
CTTGACCAAC AAAATCTGTC GATACATAAA GTAAAGCAAC TCGAGCACTA TATCACCAAT
ATAGCCGAAG ATAAGCAAGG CTATCTCTGG CTCTCGACTC GAGCAGGATT ATTACGATGG
TTCCCGGATG CCAAAAAAGG CATGCTCTAC GGTAACGAAT TAAAACAAAA GTCCAACATA
GACTACACCT ATGACATTGC TGTCGATAAG ACTGGGTTGA TTTGGGTCGG CGGTAGCGGT
GATGGGGTCG CAATCTTAGC GACCGAAGCA GATTTTATTA TTGATAAATA TACCAAACTG
TCTCCTTACA AGCTTAAAGA TGAGGTGATT TGGACCATCT ATGCTGGCGC TAACCATATT
TGGCTCGGAA CCGATGCTGG CTTGATGCTA GTCGATAAGC ATACTCAGAA ATCCTACGTT
ATTAACCCCC AAGGGGTGAA TCTAAATGAC AGCATCTTTA AAATTGATCC GTTAGACAAA
GATCATCTGT TGTTGTCGAC GACCAATGGT TTATCTGTGG TGAATAGAAA TACTTTCCAT
AGCCAAAGCT TTGCGACTTG GTCTGGAGGC CGCAGTTCAC TTGAATATAA AATGGTTTAC
AACACTTACT TTGATACCGT CATTGAAGGG CGGATCTGGT TTGCAACGAG CAGCGGACTC
TTTTATTGGG AAAAGGGATT TCTCGAGCCC AAACTAATCC GCTTAGGTAG TGCTCTCAAT
AGTAATCTAG CGCTTGAAAT AGCTTCGGTT ACTCGAGACA GTGATCAGCG ATTATGGCTA
GGTGGCTCTC GTATTTTTGG CTACTTAGAC TCTCAGGATA CCTTCCATCC AGTATTCGAA
CCCTTAAGCT TTGCATCACA CGGTGAGTCG AATATTCGAT TTATTAAAGA GGTTAACCCT
GGGGAGCTTT GGCTTGGTTT GGAGACGCAA GGGTTACTTT CATTCGATGT TCATTCTGGT
GCGATTAAAA GTGTGACCGA TGGTTGGGAC GTTCGTTGTG ATGCGGTCTA CTTTATCGAT
AATATTGGTC ATTACCGTGT CGTTGGGTGT CCTCGCTCGT TGTTGAGGGA GAATATGCTT
GATGGTGAGC TCATAGTGAT TTCACCACGG GATGGCTGGT TAAGTGATGA GTTAAATGAA
GGGGCTTATT TTGTCTCTGA AGAGGGCCTA TATTTAGGTA CCCCAGATGG AGCCATGTTA
GTCGATGTCG ATTTATTAGA AAATAGAATC TCAGATGATT CCATGATGCT TGAATCGATA
GAGATCTACT TTGAAGATCG CACTGAACTG AATTTGATGC CGAAAAATGA CTATCATATT
TTACCCGGCG CCCAGCTAAT CAGTTTTCAA TTAGCTCGCC ATGACTACCT CAACCAGACA
CCTATGCAGA TTAAGTATCG TTTACGTAGA GGCGGGCTAG ATGATCAGGC AAACTATATT
TTTCTCGATG GAAAATCTCA ACTCAATATC TCCGGTTTAG CGTCCGGCTC CTATGTGCTG
GATATTCTTA GCATGAACAA TGAAGTTTGG TCTGAGAAGC CATTCTCATA CCGTTTTTAC
GTCGAGAAGT ATTGGTGGCA GACTTCTTGG TTTAAAGGCG GTATTTTGCT TTGTCTATTG
CTAACAGGAC TGGGCATTAT TTTTTACCGA CAGCGCCAAG TCATGGCATT TAAAGGGGTT
AATTCGGCGC TAATCGACAG TGAGAATCGG CTCAAGCAAG CACTAAAAGG CAGTAACTCA
GAGCTATGGG AGTGGCAGCG TGAGAGCGAC CTATTTCGTC TAGAAAATAC GGGCGGAGTA
TTAGCTGCTG GACAGTCACA AGTATACTTT AGGTTAGATC AGTTCCCCAT CCACAAAGAA
GATGTCGGCG AAGTCATGGC TGCATGGGAA GATATGTTGC AGGAGCGCAC CGACCGATTT
GAAGTCGAGT ATCGATACTG GCGCACCAAT GGCACTATGG GCTGGGTTCG TGTGTCGGGC
CGACCAGTTG AAAGGAGTGA TGTTTCTGGG TCTATCGAGC GGATTGCTGG GATTTATAGT
GATATCACCG AGCAGCGAAA ACTAAAAGAT GATGTTTATC TGTTAGCACA AGCATTTGAA
AATACATCAG AAGCCGTGCT TATTTTTGAT AGCGACGAGA CGATTCAAGT GAGTAATAAG
GCCGCTCAGA ATATTATTGG ATTAGATTCT GAAAGCTTGA TTGGCTTGTC TTTTTCACAG
GTTCTACAGG GGGAAGAGAA AAGTGCCAGT ATAGCTAACC TACTGCAGCA GGGATTGAGC
TGGGCTGGAG AGTGTTTTGT TGATGCGGGT GGTTGCCAAA GGTGTGCGGT TTGGCTGAAT
GTCTCCTCTA TTTTGAATTC AAGCGGTAAT GCTAGCCGTT ATGTGGTGGT TTTTTCCGAT
ATAACTGAGC GTAAACGTAC GGAGGCTGAA CTGCGCCGCT TAGCCAATTT CGATATATTA
ACGGGCTTAC CTAACCGCTC CTTGTTCTCT AGCAAACTCG CTCAGTCGGT GTATCAAGCA
GAAAAAGAGG GCGGGAACTT AGCCCTGCTC TTTTTGGATT TAGACAGGTT CAAACATGTG
AACGACTCAT ATGGCCATAG TATGGGAGAT GCTCTGTTAG TCGAAGCTTC TAATCGTTTA
CAGTCTCTGG TTGCTGATGA AAATGTCTTG TGCCGTTTTG GTGGTGATGA GTTTGTTATT
TTGCTGCGTG ATACTCCTAC AATTGATACC GTGAATTATT TATGTGAGCA GTTACTGGCG
AGTATAGAGA AGCCTTTTGT GCTCTACGGG CGGGAGTTCT TTATCTCAAC TAGTATCGGT
GTGAGTCTAT GGCCGGAAGA TGCGAAACAG CCAGAGGTGT TGATTAAAAA TGCCGACTTA
GCCATGTATC ACGCTAAGGA AGAGGGCAAG GGCCATTTCA AATATTATTC CGAAGAGCGC
AATGCTGAAG CGCTTTATCA TTTAGCATTA GAAGCCGATC TACGTAAGGC GATAGAGCGA
AACGAGCTCG AGTTACACTT TCAACCTCAA ATAGATATTT TGCAAAATGA TAAACTCGTC
GGTGTAGAAG CGCTATTGCG CTGGAACCAT CCTAAAGAGG GTTTTATTCG CACTGATATC
TTTATTAAGG TGGCGGAGGC GTGTGGTCTG ATTGTTGAAA TCGATCGCTG GGTCATGGGT
GAGGCTTGTC GACGTGGTGC GATTTGGTCT CAGAAATTAG CAGAACCGAT TAAGGTTTCG
GTCAACATCT CTGCACTGCA CTTTCGCCTC CCAGACTTTA TTAGCGGTGT TCAGCAGATC
ATGGCTGAGA CGGAGATGCC ACACTCAGCA CTCTCATTAG AGATCACTGA AGGGGTGTTG
ATGAAAGAGC TTGAGGTGGC CAAGCAACAT CTGAAAGCGC TTAAAGAACT AGGGATAGAT
GTGGCGATCG ATGATTTCGG TACCGGTTAC TCGTCACTGG CTTATTTAAG ACATTTTGAG
GTCAACACCC TTAAAATTGA TCGCTCTTTC CTTATCGATA TCGCAACCAA TAAGGCCGAT
CAAGCGATAG CGAGCAGTAT CATCGAGCTG GCAAGAAACT TGAAGTTAGA TGTTGTTGCC
GAGGGGGTAG AAACCCATGA GCAGCTTGAG CATGTTTTCA GTCGAGGTTG CTATGTTATC
CAAGGGTACT ACTTTGCCAA ACCTATGCCA CTGGCAGAGA TTGAAACTTA TATGGGCTTA
AATCAGAACT TAAATAACAG CTTAACCTTA GAGGCTTAG
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| Protein sequence | MRIIIKKIWL SFILLSLTCA VPALASGVVQ RVFTASDGLI NGTVFDIGFD EHGFTWLATG
EGLYRVSSNK VRRIDKVGLN SKINDSLLYL SVPLSKQHIL VSGKYQAYLY DIYANRFVGF
GSPELFPEYR GSGIVSQIQD SNGDRILLTY DGELLRFNYQ SMSLKRIKFL PNNPDHPWWR
MLSLSENRLL VGQEKHLEVR DLNGVRLDVL PWKKEWGMIK NVIKHSNGRV WISSSKGLFE
LDQQNLSIHK VKQLEHYITN IAEDKQGYLW LSTRAGLLRW FPDAKKGMLY GNELKQKSNI
DYTYDIAVDK TGLIWVGGSG DGVAILATEA DFIIDKYTKL SPYKLKDEVI WTIYAGANHI
WLGTDAGLML VDKHTQKSYV INPQGVNLND SIFKIDPLDK DHLLLSTTNG LSVVNRNTFH
SQSFATWSGG RSSLEYKMVY NTYFDTVIEG RIWFATSSGL FYWEKGFLEP KLIRLGSALN
SNLALEIASV TRDSDQRLWL GGSRIFGYLD SQDTFHPVFE PLSFASHGES NIRFIKEVNP
GELWLGLETQ GLLSFDVHSG AIKSVTDGWD VRCDAVYFID NIGHYRVVGC PRSLLRENML
DGELIVISPR DGWLSDELNE GAYFVSEEGL YLGTPDGAML VDVDLLENRI SDDSMMLESI
EIYFEDRTEL NLMPKNDYHI LPGAQLISFQ LARHDYLNQT PMQIKYRLRR GGLDDQANYI
FLDGKSQLNI SGLASGSYVL DILSMNNEVW SEKPFSYRFY VEKYWWQTSW FKGGILLCLL
LTGLGIIFYR QRQVMAFKGV NSALIDSENR LKQALKGSNS ELWEWQRESD LFRLENTGGV
LAAGQSQVYF RLDQFPIHKE DVGEVMAAWE DMLQERTDRF EVEYRYWRTN GTMGWVRVSG
RPVERSDVSG SIERIAGIYS DITEQRKLKD DVYLLAQAFE NTSEAVLIFD SDETIQVSNK
AAQNIIGLDS ESLIGLSFSQ VLQGEEKSAS IANLLQQGLS WAGECFVDAG GCQRCAVWLN
VSSILNSSGN ASRYVVVFSD ITERKRTEAE LRRLANFDIL TGLPNRSLFS SKLAQSVYQA
EKEGGNLALL FLDLDRFKHV NDSYGHSMGD ALLVEASNRL QSLVADENVL CRFGGDEFVI
LLRDTPTIDT VNYLCEQLLA SIEKPFVLYG REFFISTSIG VSLWPEDAKQ PEVLIKNADL
AMYHAKEEGK GHFKYYSEER NAEALYHLAL EADLRKAIER NELELHFQPQ IDILQNDKLV
GVEALLRWNH PKEGFIRTDI FIKVAEACGL IVEIDRWVMG EACRRGAIWS QKLAEPIKVS
VNISALHFRL PDFISGVQQI MAETEMPHSA LSLEITEGVL MKELEVAKQH LKALKELGID
VAIDDFGTGY SSLAYLRHFE VNTLKIDRSF LIDIATNKAD QAIASSIIEL ARNLKLDVVA
EGVETHEQLE HVFSRGCYVI QGYYFAKPMP LAEIETYMGL NQNLNNSLTL EA
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