Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0418 |
Symbol | pdhR |
ID | 5660818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 511158 |
End bp | 511910 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641234955 |
Product | transcriptional regulator PdhR |
Protein accession | YP_001500281 |
Protein GI | 157960247 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTATA GCAAAATAAA CCAGCCAAAA ATATCCGATG TCATTATGGG ACAGTTGGAG CAGATGATTC TGGAAGGCAG TATTCAACCA GGACAAAAGC TACCACCTGA ACGTGAACTG GCATTGCAAT TTGAAGTTTC GCGCCCTTCT TTACGTGAAG CGATTCAAAA ATTAGAAGCA AAGGGCTTGT TGATGCGTCG TCAAGGCGGC GGAACCTATG TAAAAGAGCA ACTCTGGCAA AGTCTTGCCG ACCCAATTGT TGAACTCATG CATTCAGATT CAGAAAGTCA GTACGACTTA CTGGAGTTTC GTCATGCCAC TGAAGGCATG ATGGCGTATT TTGCAGCGCT TCGTGGTAAC GACGCCGATA TGCAAAATAT TAAGCGTACG ATTCTGGAAG TTGAGTCAGC TAATTTAATT GAAGATCAAG CTAATGCGAT TGTGCGTTTT TACCGCGCAG TTGCCGAAGC GTCACACAAT GTGGCTATGC TTCACCTTGT ATTAAGTTTA TCTCCAGTGC TGCATAAAAA CGTGGCACAA AACTTAGAGC TTTTAAGCCG ACGCGAAGAA GCCTCTACAA CGGCTAATGA TCACAGACGA GCGCTGCTTG CTGCAATTAT TCGCCGCGAC CCAGAAGCTG CACGCGAAGC CTCCAATGAA CACTTAAGTT ACATTGAAGA GGTGATGCTG TCAGTAAGGG AAGAAGACAG CCGATTGCAG CGTAGCCTGC GTCGTTTAAA GAGTGGTGTA TAG
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Protein sequence | MAYSKINQPK ISDVIMGQLE QMILEGSIQP GQKLPPEREL ALQFEVSRPS LREAIQKLEA KGLLMRRQGG GTYVKEQLWQ SLADPIVELM HSDSESQYDL LEFRHATEGM MAYFAALRGN DADMQNIKRT ILEVESANLI EDQANAIVRF YRAVAEASHN VAMLHLVLSL SPVLHKNVAQ NLELLSRREE ASTTANDHRR ALLAAIIRRD PEAAREASNE HLSYIEEVML SVREEDSRLQ RSLRRLKSGV
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