| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0378 |
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| Symbol | dapF |
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| ID | 5660778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 457970 |
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| End bp | 458806 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641234912 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001500241 |
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| Protein GI | 157960207 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATCT TGATCCAATT CACTAAGATG CATGGGCTAG GCAATGACTT TATGGTCGTC
GATGGGGTGA CACAGAATGT GTTTTTCTCT CCCGATCAAA TTAAGCGCTT GGCCGATCGG
AATTTTGGCG TGGGCTTCGA TCAGTTACTG CTGGTTGAGC CTCCCTACGA TCCCGATTTA
GATTTTCATT ATCGCATCTT TAATGCTGAC GGCAGTGAGG TTGAGCAGTG TGGCAATGGC
GCACGCTGTT TCGCACGTTT TGTGCGTAAT AAAGGCTTAA CCCATAAGCA TAAAATTCGC
GTCAGCACCT CTTCGGGCAA GATAACCTTA CGCCTTGAGC GTGATGGCAA GGTGACCGTT
AATATGGGGA TCCCAGCTCT AGAGCCAGGT AAGATCCCAT TTACCGCTAA GAAGGTAGAG
AAAACCTATT TGTTGATGGC ATCCAGTGGC ACCTATCTAT GTGGCGCTGT TTCTATGGGC
AATCCTCATT GCGTGATAGA GGTAGAAGAT GTAGCCGCGA CTGATGTCGA TACTATTGGC
GGCGAGCTGA CTAACCACGA GCGTTTTCCG AAGGGCGTGA ATGTCGGCTT TATGCAGGTG
CTAAATTCTG GCCATATTAA GCTCAGAGTC TACGAGCGCG GCGCGGCAGA AACCTTAGCC
TGTGGTACAG GAGCCTGTGC TGCAGTCGTT GTTGGGATCT TGCAGGGTAA ACTGGATAGA
AATGTGCAGG TAGACTTGCC AGGTGGCAGC CTAATGATCA ACTGGGACGG TGAGGGTAAG
CCGCTATGGA TGACTGGGCC TGCTGAGCAT GTTTATGATG GGCAGATTGC GCAATGA
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| Protein sequence | MSILIQFTKM HGLGNDFMVV DGVTQNVFFS PDQIKRLADR NFGVGFDQLL LVEPPYDPDL
DFHYRIFNAD GSEVEQCGNG ARCFARFVRN KGLTHKHKIR VSTSSGKITL RLERDGKVTV
NMGIPALEPG KIPFTAKKVE KTYLLMASSG TYLCGAVSMG NPHCVIEVED VAATDVDTIG
GELTNHERFP KGVNVGFMQV LNSGHIKLRV YERGAAETLA CGTGACAAVV VGILQGKLDR
NVQVDLPGGS LMINWDGEGK PLWMTGPAEH VYDGQIAQ
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