Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0365 |
Symbol | |
ID | 5660765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 420786 |
End bp | 422213 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641234899 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001500228 |
Protein GI | 157960194 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAGCA GCACAGTACG GCAGCTAAAG CGCAGTGCAT TAGCACTTGC CGTTAGCGCG CTGATGATAC CAGCTACAGT TTCTAGCCAA ACGCTAGAGC AAGCTGTAGC ACACACACTG GATACAAATC CCGAAATCCG GATTGCATTT AACCGCTTTA AGGCTCGTGA AGAGCAGGTA AATCAAGCGG TAGCGGGCTA TATGCCAACG GTTGATATCA GTGCTGGCTA TGGTTGGGAG CAGACTAACA GCCCATCGAC TCGTCGACGT GCTCCTAATG GTGTTGGCCA AGGCGACGTT GATGATGATG GCGTGATAGA ACTAGAACGT GGTGAGGCGG GTTTTAGTAT CAAACAGATG CTTTTCGATG GTTTCCACAC TAGCAGCGAA GTCGACAGAT ACAGCTTCGA AGCCAGCGCC GAACAGTGGG CATTATTTGC CGCCGCCGAA GATATGGCGC TAGATGTTGC AAAAGTTTAC ATCAATTATA TTCGCAGTGA ACAGGTTCTC ACCTTGGCAG AGAAGAATCT TCAAAGTCAT AAAGATATCT ACGAGCAAAT TAAGCAGCGT ACCGACTCAG GCCTAGGCTC TACTGCCGAT CTTTCGCAAA TTACCGGTCG TTTAGCGCGT GCTAACGCCA ATGTAATCTC CGCACGCAAT AACTTCTACG ATGCCAAATC TCAATTTGTT CGCATCGTTG AGCAACAACC AGAAGACATG ATAGTGCCAG TGCCTGACGC AGACATGCTT CCAGCCGATC TCAGCAGTAG CGTCATGATG GCCCAAGATA ACCATCCGAT TCTTAAATCA GCCGCGAGCG ACATCTACGC CGCCGAGAAT GAGAAAGACT CGGCGCAATC CAATTATTAT CCAAAGGTTA CCTTAGAGCT AGATGGTAAC TGGAATAATA ACCTCGATGG TGAAGATGGT TATTCCGCTT TGGCGAGTAA TAATGTTGGT GGCCATAATA ATGATCTAGT TGCTATGGTG CGCTTAAAGT ACAACCTATT TGCCGGTGGT CGCGATCTGG CTCGTGAAAA AGAAGCCGCC TATAAAGTTG GCGAAGCTAA AGAGATCCGT CAACGTGCCC ACAGACAGGT TGTTGAAGGC GTCAACTTAG CTTGGAACGC CTACGAGCTT CTCACTCCGC AAAAAATGTA CATTCGCGAC CATGTTGTTG CAGCTAAAGA TACCCAAGTT GCCTATAGCC AGCAGTTCAA TTTAGGTCAG CGTACCCTAC TGGATCTACT CGATACTGAA AATGAGCTTT TTGAAGCCAG AAAAGATTAT TTAGAGTCTG AGTATGATGA AATTATCGCT CAATACCGCG TATTAAATGC CACCGGGCAA CTGCTCGATT CACTGCGCGT GACTAGACCC GATGTCTGGA ATGGAGAGAG AGATTACGAA GGAGGAGTCC CACAATGA
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Protein sequence | MDSSTVRQLK RSALALAVSA LMIPATVSSQ TLEQAVAHTL DTNPEIRIAF NRFKAREEQV NQAVAGYMPT VDISAGYGWE QTNSPSTRRR APNGVGQGDV DDDGVIELER GEAGFSIKQM LFDGFHTSSE VDRYSFEASA EQWALFAAAE DMALDVAKVY INYIRSEQVL TLAEKNLQSH KDIYEQIKQR TDSGLGSTAD LSQITGRLAR ANANVISARN NFYDAKSQFV RIVEQQPEDM IVPVPDADML PADLSSSVMM AQDNHPILKS AASDIYAAEN EKDSAQSNYY PKVTLELDGN WNNNLDGEDG YSALASNNVG GHNNDLVAMV RLKYNLFAGG RDLAREKEAA YKVGEAKEIR QRAHRQVVEG VNLAWNAYEL LTPQKMYIRD HVVAAKDTQV AYSQQFNLGQ RTLLDLLDTE NELFEARKDY LESEYDEIIA QYRVLNATGQ LLDSLRVTRP DVWNGERDYE GGVPQ
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