| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0361 |
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| Symbol | |
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| ID | 5660761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 413908 |
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| End bp | 416529 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641234891 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001500224 |
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| Protein GI | 157960190 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0483164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAGGG AAGAAACATC TCAGTCAAAA GTGACATTGA GATTGAATAA AAGGATTACT
CGTTTAAAAA AGTTGGCGCT GAAATACAAG CGTGCAGAGA TAACTCAAAA TGCGCTACTA
GAGATCTCTA ACTTTGCAGC AAGAGTTACC ACTCCTGAAG AATTCTATTT ATCACTGCAT
AAGTCGATCA AAAAACTGAT CCCTGCAGAT AACTTTTTCA TCGCCACACT CAACTCGACC
ACAGGCAAGA TTGAAATCCC TTTCTTTCAA GATGAGAAAG ACGTACACCC TAGAGACTGC
TATCCCAACG AAGAGTTATC CGACACTTTG TCCAGTGGAC TAACTGGCTA CGTGCTCAAA
ACAGATCAAA CATTGATCTG TGATGATGAA ACCTACCGCC AACTTGTCGA GTCAAAAGCC
ATCACGCCGC GGGGCAGCCA TTTCCATCAA TGGGTAGGCA CTCCGATTAG AAGCGTCGAT
AGCACCATAG GTGTATTAGT CTTTCAAAGT TATAGCCGTG ACACCCTCTA TAATGAGATA
CAGATTGAGC TAATGAACTT CATTAGCCAC CATATTTCTG GAGTGATTCA AAAGCTGCAA
AATCAAGAGC AGTTAGAGCA AGCAATAAAC ACCCGCACCA AAGAGTTAAG CATCGCGTAT
AACAAACTAA AGCAAGAAGT CTATGAAAGG CGCCGCGCTG AACGTCTACA AAAGTCACTG
TTTGAGATCG CAGACTTGGC GAACTCAAAT ATCGATAACC AAGAGTTCTA CAGCGAGATC
CATCGCGTCA TTAGCCATTT ACTGCCAATC AATAACTGCT TTATCTCGCA GCTTAATGAA
AAACGAAATG CTATCACCTT TCCCTATTTC GTCTCTCAGT TTGACCAGAC CTTGCCAAAA
CCTCGAGCCC TAAGTGATGG TTTAACCGAG TACATCCTAA TGCATAGCAA GCCCAGGTTA
CTCAATCGAA ATGATATTAA TGAGCTTGTT GAATCGGGGG TTATCTATTG CGAAGCACCT
GAGCTAAATG AAACCCAAGA GATCAACCAA TGGATAGGTA TCCCCCTGTT TATTCATGGT
CAAGTCTGCG GTGCACTGAC GGTTTACAGT TATAGTTTTA GCCAAAACTA TCAAGAGAAA
GACCTAGAGT TACTTACTTT TGTCTCTCAC CACATTGCGA CTGCGATTGA GAAAAAATTA
TCTGCCGAGT CATTAAAGCT AAGCTACGAG CAGTTAGAAG ACAAAGTTAA TCAACGAACT
AAGGCATTAG AGAGCGTTAA TCAAGATCTT GAAAAGGAGA TTAACCAACG TAAATGTATC
GAACGCCAGT TAGTGCACGA TGCCAAGCAT GACAATTTGA CAGGCCTTCC CAATCGCTCC
ATGTTTATGG AGCGCTTAAC TCAAGCAATA AAGCATGTGC GTAGGCATAG TCTTAATAGA
TTTGCCGTAC TCTTTATTGA TATGGACAGA TTTAAGCTGC TTAACGACAC CCTAGGCCAC
CTACAAGGCG ACCGCTTCTT AATTGAAACG GCAAAACGCC TGCAACAGTG TATTCGTAGC
AATGACATGC TCGCCCGCCT AGGAGGTGAT GAGTTTGTTA TTTTTCTCGA TAGTATCAAT
GGTCAGCAGG ATGCAGAAGA TGTAGCAGAA AGAGTATTGG CCGAGCTGTC CAGGCCTTAT
GAGCTTGCTA ACCAGCAATT TAACTCTAGT GCCAGCATTG GCCTTGCGAT GAGCGGACTC
AGCCATTCAG ACACTAGCGA GTCGATACTT CGAGATGCCG ATACGGCGAT GTACCAAGCA
AAATCACATG GTAAAGGCTG CTATGTGATC TTTAATCATG GGGTGAATCA GCAACAGATT
AAAGATATCA AGCTAGAAAA CGAACTTAAA AATGCTCTAC TCAATCAAGA GTTAAAACTC
AGTTACCTGC CAATCATGGC ATTGGGCTCA CAACAAACTC TGGCTTTCGA GCCTAGGCTA
TTCTGGCATC ACCCGACTTT AGGCAAGTTA AAGCAAGCAC AACTGAACAA TATCGCCGAG
CATTGCAACA TGGTGATTGA ACTCGACAAT TACTTATTAG AGTTGGTTAA TCAGAGCTAT
CATCACATGC AACTGGAATA TGGCAGTCAA CTTCAACTAC ATGTGTCTAT CTCGAGTCAG
CACTTGAATC ATAAGTATGC GTTAAGAGCC CTTAAAAATA GAGTTAAGCA GTGCCAATTC
AATATTAACG AGTTGACCCT GTTTTTTAAT GAAAAGGCCT TCGTGCAAAA CACCAATAAT
CACATCAGCG CCTTCGATAG CCTCAGCAAA CTTGATGTCA AACTTGGGAT TGAAGCCTAT
GGCAGTGCGC ACAGCGCGAT CAGTAGCTTG ACCTTCCTCC CCATTCAAGC ACTAAAACTC
GACTCTAGCT ATGCCGCTCA CCTAAACAGT CAGCAACATG TTAAGTTGGT AAAAGCCTAC
TTTAATGCGG CTCAGGCTCT AGAGTTTGAG ATCTTCGCCG TAGGAATAAG CAATCACAAA
CAGTGCGCTA TATTGCAGGA GTTAGGATTT ACTAAAGGCC AAGGTAGCCT ATTAGGTAAT
GTGATTGAGT TAGAGACAAA CAAAAACAGG GTATGTGCCT AA
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| Protein sequence | MFREETSQSK VTLRLNKRIT RLKKLALKYK RAEITQNALL EISNFAARVT TPEEFYLSLH
KSIKKLIPAD NFFIATLNST TGKIEIPFFQ DEKDVHPRDC YPNEELSDTL SSGLTGYVLK
TDQTLICDDE TYRQLVESKA ITPRGSHFHQ WVGTPIRSVD STIGVLVFQS YSRDTLYNEI
QIELMNFISH HISGVIQKLQ NQEQLEQAIN TRTKELSIAY NKLKQEVYER RRAERLQKSL
FEIADLANSN IDNQEFYSEI HRVISHLLPI NNCFISQLNE KRNAITFPYF VSQFDQTLPK
PRALSDGLTE YILMHSKPRL LNRNDINELV ESGVIYCEAP ELNETQEINQ WIGIPLFIHG
QVCGALTVYS YSFSQNYQEK DLELLTFVSH HIATAIEKKL SAESLKLSYE QLEDKVNQRT
KALESVNQDL EKEINQRKCI ERQLVHDAKH DNLTGLPNRS MFMERLTQAI KHVRRHSLNR
FAVLFIDMDR FKLLNDTLGH LQGDRFLIET AKRLQQCIRS NDMLARLGGD EFVIFLDSIN
GQQDAEDVAE RVLAELSRPY ELANQQFNSS ASIGLAMSGL SHSDTSESIL RDADTAMYQA
KSHGKGCYVI FNHGVNQQQI KDIKLENELK NALLNQELKL SYLPIMALGS QQTLAFEPRL
FWHHPTLGKL KQAQLNNIAE HCNMVIELDN YLLELVNQSY HHMQLEYGSQ LQLHVSISSQ
HLNHKYALRA LKNRVKQCQF NINELTLFFN EKAFVQNTNN HISAFDSLSK LDVKLGIEAY
GSAHSAISSL TFLPIQALKL DSSYAAHLNS QQHVKLVKAY FNAAQALEFE IFAVGISNHK
QCAILQELGF TKGQGSLLGN VIELETNKNR VCA
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