Gene Spea_0348 details

Gene Information

• Locus tag: Spea_0348
• ID: 5660748
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 394506
• End bp: 396353
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641234878
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_001500211
• Protein GI: 157960177
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAC TACGTTCAGC AACCAGTACC GAAGGCCGTA ACATGGCGGG AGCGCGTGCG 
CTATGGCGTG CAACAGGTGT GAAAGATAAC GACTTCGGTA AGCCGATTAT CGCAATTTCA 
AACTCGTTCA CTCAGTTTGT GCCGGGGCAC GTTCACCTGA AAGATATGGG GTCTTTGGTG 
GCGGGAGCGA TCGAGGAAGC GGGCGGCATT GCTAAAGAAT TTAATACCAT TGCAGTGGAT 
GACGGTATCG CTATGGGACA CGGCGGTATG CTTTATAGCT TACCATCGCG CGAGCTGATT 
GCAGATAGTG TGGAGTATAT GGTCAATGCC CACTGTGCCG ATGCACTAGT GTGTATTTCT 
AACTGCGATA AGATCACCCC TGGCATGCTC ATGGCCTCAC TTAGACTGAA TATCCCTGTC 
ATCTTTGTCT CAGGTGGCCC GATGGAAGCG GGTAAAACTA AGCTGTCTGA TAAGTTAATT 
AAGCTGGACT TAGTCGATGC CATGGTGGCC GGCGCCGATG AGCGCGTATC CGATGCCGAT 
AGCGAGCAGA TTGAGCGCAG CGCCTGCCCA ACTTGTGGCT CATGTTCGGG TATGTTTACT 
GCTAACTCGA TGAACTGCTT GACCGAAGCA CTAGGCCTTT CACTGCCGGG TAACGGATCT 
ATGCTGGCCA CCCACGCCGA TCGTCGCGAA CTCTTCCTCG AAGCGGGTCG TCGCATCATG 
GATTTAGCCA CTCGTTATTA TAAGCATGAT GACGAGTCAG CATTGCCACG TAATATCGCT 
AACTTCAAGG CGTTTGAAAA TGCCATGACG CTAGATATCG CCATGGGCGG ATCAAGCAAT 
ACCGTGCTGC ATTTACTTGC AGCAGCGCAA GAAGCTGAAG TCGATTTCAC CATGGATGAT 
ATCGACCGTC TGTCGCGCCT TGTACCGCAC CTTTGTAAGG TGGCTCCGGC AACGCCTAAA 
TACCATATGG AAGATGTCCA CCGCGCTGGT GGTGTAATGG GGATTCTAGG TGAGCTAGAC 
CGAGCTAACT TACTGCATAA CGACGCCTAC CACGTAGCGG GTGAAAACCT TGCCGCAGTA 
TTGGCAAAAT ACGATATCGC ACAGAGTGAT GACGCCGCTG TGCGTAAATT CTTCTCTGCA 
GGCCCTGCTG GTATTCCAAC TACCAAGGCC TTTAGTCAGG ATTGCCGCTG GGACAGCGTC 
GATGATGACC GTCAGCAAGG TTGTATCCGT AGCCGTGAAT TTGCCTTTAG CCAAGAGGGC 
GGGCTTGCCG TGTTATCGGG TAACGTGGCC GTTGATGGTT GTATCGTTAA GACTGCTGGC 
GTAGAGGTAG AAAATCACAC CTTTATCGGT AGCGCTCGAG TGTACGAGAG TCAAGATGAT 
GCGGTGGCGG GCATTTTGGG TGGTGAAGTG GTGGCTGGCG ATGTGGTGGT TATTCGCTAC 
GAAGGCCCTA AAGGTGGCCC AGGCATGCAA GAGATGCTTT ACCCAACGAG TTACTTGAAA 
TCACGTGGCT TAGGTACTCA ATGCGCATTG ATCACCGATG GGCGCTTCTC GGGTGGTACT 
TCAGGCTTGT CGATAGGTCA TGTTTCTCCA GAAGCTGCTG CGGGTGGCAC TATCGGTCTA 
GTGCAAACGG GCGATCGTAT CGAAATTGAT ATCCCTGCAC GTTCAATCAA GCTAGCAATC 
AGTGATGTTG AGTTAGCGGC GCGTCGCACT GCAATGGAAG CACTTGGTAA TGATGCGTGG 
AAGCCCCTTG GGCGAGTAAG ACACGTATCT ATGGCACTTA AAGCCTACGC ATTATTAGCG 
ACCAGTGCCG ATAAGGGCGC GGTGCGTGAT ACTAGCAAGC TAGTTTAA 

 

Protein sequence

MPKLRSATST EGRNMAGARA LWRATGVKDN DFGKPIIAIS NSFTQFVPGH VHLKDMGSLV 
AGAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS 
NCDKITPGML MASLRLNIPV IFVSGGPMEA GKTKLSDKLI KLDLVDAMVA GADERVSDAD 
SEQIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHADRRE LFLEAGRRIM 
DLATRYYKHD DESALPRNIA NFKAFENAMT LDIAMGGSSN TVLHLLAAAQ EAEVDFTMDD 
IDRLSRLVPH LCKVAPATPK YHMEDVHRAG GVMGILGELD RANLLHNDAY HVAGENLAAV 
LAKYDIAQSD DAAVRKFFSA GPAGIPTTKA FSQDCRWDSV DDDRQQGCIR SREFAFSQEG 
GLAVLSGNVA VDGCIVKTAG VEVENHTFIG SARVYESQDD AVAGILGGEV VAGDVVVIRY 
EGPKGGPGMQ EMLYPTSYLK SRGLGTQCAL ITDGRFSGGT SGLSIGHVSP EAAAGGTIGL 
VQTGDRIEID IPARSIKLAI SDVELAARRT AMEALGNDAW KPLGRVRHVS MALKAYALLA 
TSADKGAVRD TSKLV