Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0335 |
Symbol | |
ID | 5660735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 378094 |
End bp | 378762 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641234865 |
Product | two component transcriptional regulator |
Protein accession | YP_001500198 |
Protein GI | 157960164 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000018466 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTGC TAATTGTTGA TGACAGCCAT AACCTAAGTG AAACAATCGC CGACTATTTG GAACTCGAAG GCATGATTAT CGACTGCGCC TATCACGGTG AGGCCGCGAT TAATTTAGTC TCCGAAAATA GTTACGATGT CATCATTATG GATATCATGA TGCCAAAGAT TGACGGCATC ACCGCAGTAC GCAAGCTCCG TGAAGAGCTG TATTGCAACA CGCCTATTTT ATTTCTCACC GCCAAAGACA GCCTCGACGA CAAAGTCGCC GCCTTCAAGG CCGGTGGCGA TGACTACCTG CTCAAGCCCT TCGCCATGGA GGAGCTGAGT CTGCGTCTAC ATGCACTGAG TAATCGCGGA CCAAGGCAAG ATATCGGCAC CTTGTCCTTT GCCGATATCA AGATTAATAC TCAGACCGAT GTTGTGACAC GAGGCGAGCA ACCAATTAAG CTCAGCCGTA TCCAGCTAAA AATATTAAAG GTGTTGCTCA AGCGTGCGCC GAGTATTGTC AGCCGCCAAG ATGTAACAGA TGCAGTCTGG GGGGATGAGT CTCCTCCGAG TGATGCCTTG CGTAGTCATA TTTACGGCCT GCGAACCGCC CTTGACAAAG GCTTCGAACA ATCACGATTA GAGACGATTC ATGGACAAGG TTACCGCCTC AAAGCATAA
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Protein sequence | MKVLIVDDSH NLSETIADYL ELEGMIIDCA YHGEAAINLV SENSYDVIIM DIMMPKIDGI TAVRKLREEL YCNTPILFLT AKDSLDDKVA AFKAGGDDYL LKPFAMEELS LRLHALSNRG PRQDIGTLSF ADIKINTQTD VVTRGEQPIK LSRIQLKILK VLLKRAPSIV SRQDVTDAVW GDESPPSDAL RSHIYGLRTA LDKGFEQSRL ETIHGQGYRL KA
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