Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0235 |
Symbol | |
ID | 5660635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 266028 |
End bp | 266648 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641234764 |
Product | pilus assembly protein PilO |
Protein accession | YP_001500098 |
Protein GI | 157960064 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3167] Tfp pilus assembly protein PilO |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.613869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTTAG ATTTAGACCA ATTTAAAGAT ATTGATTTTG AAAATATTGG TGCTTGGCCG CAACTGGTCA AAATTGTATT TGCTGTCGTA TTGGCTGTGT GTGTGTTCGT TGGTAGCTAT TTTCTATTCA TTTCTGATGC TCTCGACTCG CTTAGTGCAG AGCAAAACAA AGAACAACAA TTAAAAACAG ACTTTAAATC CAAATATCAA CTGGCGGCAA ACTTGAAACT CTATCGTGAA CAACTCGCGA CAATGGAAAT ACAGTTTGCT GAACTACTTA AAATGTTGCC TTCAAAAAAT GAAATGCCAG GATTGCTGGA TGACATTACC TTTGTGGCAA CAGATTCTGG GTTAAATATT AAGAGTCTAG ATTGGGACTC GGAAATTGCT CGTGATTTCT ATATCGAATT TCCTATCAAA ATAGTGGTGG GCGGTGATTA CCATGAATTA GGTCACCTAG TTGGAGGGGT TGCTCAGCTA CCTCGAATTG TTAGCTTGCA TGATTTTGTT ATTAAGCGAA ATGATTCTGG TGAGCTTGGC ATGGATATTC TGGCTAAAAC TTACCGATTT AAAGAGGGTG CCGAATTACC AGCAAAGGGG AAGAAGGGGG CGGTAAGATG A
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Protein sequence | MNLDLDQFKD IDFENIGAWP QLVKIVFAVV LAVCVFVGSY FLFISDALDS LSAEQNKEQQ LKTDFKSKYQ LAANLKLYRE QLATMEIQFA ELLKMLPSKN EMPGLLDDIT FVATDSGLNI KSLDWDSEIA RDFYIEFPIK IVVGGDYHEL GHLVGGVAQL PRIVSLHDFV IKRNDSGELG MDILAKTYRF KEGAELPAKG KKGAVR
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