Gene Spea_0235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0235 
Symbol 
ID5660635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp266028 
End bp266648 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content39% 
IMG OID641234764 
Productpilus assembly protein PilO 
Protein accessionYP_001500098 
Protein GI157960064 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.613869 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTAG ATTTAGACCA ATTTAAAGAT ATTGATTTTG AAAATATTGG TGCTTGGCCG 
CAACTGGTCA AAATTGTATT TGCTGTCGTA TTGGCTGTGT GTGTGTTCGT TGGTAGCTAT 
TTTCTATTCA TTTCTGATGC TCTCGACTCG CTTAGTGCAG AGCAAAACAA AGAACAACAA 
TTAAAAACAG ACTTTAAATC CAAATATCAA CTGGCGGCAA ACTTGAAACT CTATCGTGAA 
CAACTCGCGA CAATGGAAAT ACAGTTTGCT GAACTACTTA AAATGTTGCC TTCAAAAAAT 
GAAATGCCAG GATTGCTGGA TGACATTACC TTTGTGGCAA CAGATTCTGG GTTAAATATT 
AAGAGTCTAG ATTGGGACTC GGAAATTGCT CGTGATTTCT ATATCGAATT TCCTATCAAA 
ATAGTGGTGG GCGGTGATTA CCATGAATTA GGTCACCTAG TTGGAGGGGT TGCTCAGCTA 
CCTCGAATTG TTAGCTTGCA TGATTTTGTT ATTAAGCGAA ATGATTCTGG TGAGCTTGGC 
ATGGATATTC TGGCTAAAAC TTACCGATTT AAAGAGGGTG CCGAATTACC AGCAAAGGGG 
AAGAAGGGGG CGGTAAGATG A
 
Protein sequence
MNLDLDQFKD IDFENIGAWP QLVKIVFAVV LAVCVFVGSY FLFISDALDS LSAEQNKEQQ 
LKTDFKSKYQ LAANLKLYRE QLATMEIQFA ELLKMLPSKN EMPGLLDDIT FVATDSGLNI 
KSLDWDSEIA RDFYIEFPIK IVVGGDYHEL GHLVGGVAQL PRIVSLHDFV IKRNDSGELG 
MDILAKTYRF KEGAELPAKG KKGAVR